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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/JmWangBio/PepSetTest
Confirm the following by edi…
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Dear Mr. Willforss,
I'm currently using your NormalyzerDE package for my proteomics data analysis. I was doing the analyze normalization step but got error when running it.
"Warning: not all va…
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https://mp.weixin.qq.com/s/O3EB0iLB8vhbBCvc9z3pXQ
ixxmu updated
2 months ago
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[tomte](https://github.com/genomic-medicine-sweden/tomte) and other pipelines including [DROP](https://github.com/gagneurlab/drop) components will produce shortlists of aberrant expression (`OUTRIDER`…
dnil updated
2 months ago
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After running `proteinToGenome`, I'm observing a case where a peptide, arising from a gene with multiple isoforms, is found to have a mix of within exon and junction coordinates. Upon closer inspectio…
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Greetings,
I would like to thank you for this amasing tool!
Currently, I am in the process of analysing depleted serum proteomics data using non-specific peptidome workflow with IonQuant [MBR]. …
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Due date: June 6 2024
Documentation
- [ ] Separate out annotator description/perl side including performance figures, describe every piece that repo has including Machine Learning subsection, Bioinf…
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When I run `attachment::att_amend_desc()` , it now removes the lines corresponding to Bioconductor packages in the Remotes field.
Before running it:
```
Remotes:
bioc::frma,
bioc::gcrma…
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### Due date for Sprint 11 - May 16th.
### General
- [x] Improve installation instructions so that the annotator can be installed without issue on Amazon Linux 2023 - @dlin30 - 2024/05/08
### Prote…
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Hello,
I am running the Non-Specific HLA workflow for a set of DDA mzML immunopeptidomics experiment files. These are the versions of the tools I am running:
Version info:
FragPipe version 21.1…