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### Context
Salmon assumes that the reads you give it are in a random order -- see the first **Note** [here](https://salmon.readthedocs.io/en/latest/salmon.html#using-salmon) in the Salmon docs…
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Hi Ben,
I have a few questions regarding de-novo chimera removal.
1) What is the idea behind pooling samples for chimera removal? As chimeras are formed during PCR, when the samples are separate…
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In order to include all relevant data in skills we need to outline how the format should look like. We need to include the following:
* Name of skill
* Name of author
* URL of author
* Permissio…
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Hi,
I'm running make p_compressed, but I think it may be stuck? I modified the make file to use 12 threads instead of one (which was taking forever), but it's been stuck here for nearly two hours.…
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Hi,
First of all, thanks for developing this tool!
I have a few metagenomic samples from which I've estimated the number of couple of reads mapping in proper pair to the SSU rRNA genes present in …
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Hi -
I'm interested in obtaining estimates of relative abundance across all domains of life. Is this possible with sylph? If so, it's unclear to me if that would entail concatenation of pre-built d…
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### Issue Summary:
I have found that under typical conditions logging events cause a subsequent wave of 'mortality' that can be larger than that created by the logging event itself. This behavior o…
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Hello,
I am trying to analyze bulk RNAseq of preB cells (Hardy fraction D) data from mice and comparing the results of TRUST4 between different conditions. I have three genotypes for my mice, Wild-…
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I wanted to document my thoughts on the broodstock-to-smolt stage of the hatchery life cycle while they're still fresh, so that we (including Future Me) can easily pick up where we left off later this…
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Hi,
I've synthesized a bunch of spectra in the 3000A to 10000A wavelength range using Korg on a logg/teff/feh/alpha grid that I can compare with PHOENIX. One of the features I observe is major diff…