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adw96
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DivNet
diversity estimation under ecological networks
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Correlations of estimates in bipartite dataset
#144
AlexaBennett
opened
2 weeks ago
0
Is there a minimum number of samples required for testBetaDiversity?
#142
emi-panzetta
opened
6 months ago
0
DivNet on Transcripts per Million (TPM) values derived from metagenomic data
#141
lingyi-owl
opened
8 months ago
4
X covariate table and the intercept
#140
AngusBall
closed
9 months ago
2
update setup to v2 for actions and test coverage
#139
svteichman
closed
9 months ago
1
Add note about building vignettes
#138
mooreryan
closed
9 months ago
0
R "killed" or cores not returning data
#136
AlexaBennett
opened
1 year ago
4
Removing all references to `master` branch
#134
svteichman
closed
1 year ago
1
Updating vignette
#133
svteichman
closed
1 year ago
0
fixing button on README.md by knitting README.Rmd
#132
svteichman
closed
1 year ago
0
updating code coverage button
#131
svteichman
closed
1 year ago
1
Removing `master` from R-CMD-check and test-coverage
#130
svteichman
closed
1 year ago
1
removing `master` from .yaml files because default branch is now `main`
#129
svteichman
closed
1 year ago
0
DivNet on rRNA gene counts derived from metagenomes?
#128
mgabriell1
opened
1 year ago
7
Contents of pull request 125 (closed) with fix to add igraph to workflow dependencies to fix Windows
#127
svteichman
closed
1 year ago
1
Diversity estimates not plausible
#126
ARetter90
opened
2 years ago
16
Updating and documenting make_alpha_estimates
#125
svteichman
closed
1 year ago
0
Adding test files back in to increase code coverage
#124
svteichman
closed
2 years ago
0
code coverage audit
#123
adw96
closed
1 year ago
2
rename master to main
#122
adw96
closed
2 years ago
1
Testing
#121
ailurophilia
closed
2 years ago
0
Makes pick_base an exported function
#120
ailurophilia
closed
2 years ago
0
Choice of base ASV and influence on reproducibility
#119
erikrikarddaniel
closed
2 years ago
7
testBetaDiversity pseudo F-statistic calculation
#118
pooranis
closed
2 years ago
2
Error in default_network(sigma)
#117
ivanllampy
closed
2 years ago
5
simplifyBeta() missing functionality for aitchison distance
#116
msmcfarlin
closed
2 years ago
3
Cannot allocate vector of size with suspiciously large phyloseq object
#115
cramjaco
closed
2 years ago
6
Estimating Shannon Evenness with uncertainty and other parameters associated with diversity values
#114
cramjaco
opened
2 years ago
1
simplifyBeta now computes Aitchison distance if measure = "Aitchison"
#113
ailurophilia
closed
2 years ago
0
Let's get testing up to date with master :)
#112
ailurophilia
closed
2 years ago
0
Problem with simplifyBeta()
#111
msmcfarlin
closed
2 years ago
6
Pauline testing what happens when we remove divnet_alpha_estimates.R
#110
paulinetrinh
closed
2 years ago
1
test removal of divnet_alpha_estimates.R
#109
paulinetrinh
closed
2 years ago
0
Increase Unit testing, remove phylodivnet from code base
#108
paulinetrinh
closed
2 years ago
1
Can phylodivnet be added to betaDiversity vignette?
#107
msmcfarlin
closed
2 years ago
5
vignette detailing general guidance for using covariates...
#106
adw96
closed
2 years ago
3
Increase Unit testing
#105
paulinetrinh
closed
2 years ago
9
update DivNet-rs documentation
#104
paulinetrinh
closed
2 years ago
1
Issue 100
#103
svteichman
closed
2 years ago
1
adding speedyseq to suggests, updating 3 vignettes to load speedyseq …
#102
svteichman
closed
2 years ago
1
Testing
#101
adw96
closed
2 years ago
1
use speedyseq instead of phyloseq
#100
adw96
closed
2 years ago
1
Revert "Pull updates to master into testing"
#99
ailurophilia
closed
2 years ago
0
Pull updates to master into testing
#98
ailurophilia
closed
2 years ago
0
Pauline's edits to beta_diversity vignette
#97
paulinetrinh
closed
2 years ago
1
Vignette review sarah
#96
svteichman
closed
2 years ago
0
Testing
#95
ailurophilia
closed
2 years ago
0
Number of bootstrap resamples in beta_diversity.Rmd reduced. Sample d…
#94
ailurophilia
closed
2 years ago
1
Deleted vestigial appendix in beta diversity vignette
#93
ailurophilia
closed
2 years ago
1
Small tweaks to vignette header formatting in hopes of appeasing the …
#92
ailurophilia
closed
2 years ago
2
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