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https://mp.weixin.qq.com/s/BqpzGZQsquwM7T73HEXDOg
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I have a coembeded object (RNA +ATAC merged together as you descibe to do in you r vingette)
When I try to add motifs to the ATAC part using:
oembed_harmon2 class(coembed_harmon2[["ATAC"]])
[1…
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https://mp.weixin.qq.com/s/gMvsdu-fdw2bJKMeS9O3gA
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Hi, Thanks for this tool. I have been playing around with the tutorial with a set of paired scRNA/ATAC data but still having some trouble inferring GRN so was hoping to get some input.
This may be …
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I'm using STAR 2.7.2b and have been aligning SRA study SRP166889. Unlike others I've done it seems like the reads from this study cause STAR to have a very slow 2nd pass. Take for example from the s…
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https://mp.weixin.qq.com/s/zj9qeZah50ZWLa0GbUCMpw
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I have been using m6Anet a lot and I get out that table with position, prob, kmer, etc. I have recently pulled out information on just one transcript (randomly chosen) and when I look at the positions…
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https://mp.weixin.qq.com/s/GwpjUZ6yTJkG6wIzW6w6fg
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**Edited to add proposed annotations for each lncRNA**
In progress - Hi
Figure 2 of PMID:31048766 describes 13 functions of lncRNAs. If the MFs for these RNAs are not available then other terms…
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Hello dr. Hu,
Thanks for your tool! It will be very useful for my research.
I have a very quick question. When you convert the scATAC object into h5ad, which data do I have to take? The peak da…