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I have a dataset with 50M rows.
For pre-processing, I need to tokenize this and filter rows with the large sequence.
My tokenization took roughly 12mins. I used `map()` with batch size 1024 and mu…
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I am trying to use my own mpd with your TAPAS Player. When using your suggested MPD things work fine, but I receive the following Errors:
2016-12-15 13:50:50+0100 [-] Log opened.
2016-12-15 13:50:50…
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The current definition of ‘sequence variant’ is “a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration”
A. As suggested for ‘sequence alterations’, SO should clar…
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Dear Inigo:
Hello! About Circle-Map, I use Circle-Map version=1.1.3 to identify eccDNA, Circle-Map Realign command to get the result, I want to get the sequence of the spite reads of each eccD…
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### Description of bug
We performed an hybrid assembly using metaspades (ONT + SR), we had really huge coverage. Nonetheless, one of the final we discovered that there were 5 minority SNPs that were …
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Hello,
Thanks for this tool. It looks great and I am looking forward to trying it out in our clinical pipeline.
Have you considered including [LRG ](https://www.lrg-sequence.org/) in the cache?…
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Hello @tseemann and all users,
I am running snippy with basic configurations and keep getting the following error (even when change the reference from FASTA to GenBank):
[variant_manip.cpp:75 is…
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HereDoc in a function argument is interesting, as in this case, the heredoc only starts from the next line onwards, and is meant to be inserted in the argument index where the first heredoc token star…
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Hi Erik,
I am doing some precision/recall analysis on a simulated set of 13 samples where each "sample" is a random mutant of a real-life plant chromosome. I introduced exactly 200 SVs per sample an…
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Hello,
I am excited about the UTF-8 support. The page mentions "Until recently, Windows has emphasized "Unicode" -W variants over -A APIs." Does this mean the ANSI functions are now preferred over …