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Illumina
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Nirvana
The nimble & robust variant annotator
https://illumina.github.io/NirvanaDocumentation/
GNU General Public License v3.0
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Bad help info in 3.18?
#133
pablosolar
closed
1 month ago
1
Custom annotation option command not found
#132
pablosolar
opened
1 month ago
0
Options documentation
#131
pablosolar
closed
1 month ago
2
gnomADv4/4.1 support?
#130
ceftriaxoneBGD
closed
1 month ago
1
Update README.md
#129
rajatshuvro
closed
2 months ago
0
Illegal Instruction - Jasix.dll or netcoredeps issue
#128
schreyers
closed
2 months ago
2
Jasix output not in bgzip format
#127
frahimov
closed
2 months ago
2
How to access Jasix
#126
vajanishant
closed
4 months ago
1
Illegal instruction: 4
#125
veronicatozzo
closed
2 months ago
3
Downloader -- Always get truncation for same three DBs
#124
MiPSch
opened
5 months ago
1
RefSeq annotation GRCh37 transcripts NM not showing latest version
#123
danlesperance-pki
closed
2 months ago
1
Loss of function sites
#122
Asppagh
opened
5 months ago
0
The remote server returned an error: (404) Not Found.
#121
aardes
opened
7 months ago
0
SAUtils.dll custom database script failing
#120
GH-MStamboulian
opened
8 months ago
1
unable to find COSMIC annotations in the output json file
#119
GH-MStamboulian
closed
8 months ago
2
PrimateAI preprocessor
#118
oshiomah1
opened
8 months ago
0
Impact not in json file
#117
oshiomah1
closed
8 months ago
4
Parsing nirvana outputs effective with toy VCFs but fails with real data, changes in format responsible?
#116
jessmewald
closed
8 months ago
0
ERROR: Index was outside the bounds of the array.
#115
sorgoz
closed
2 months ago
2
Add AlphaMissense to the annotation sources
#114
sorgoz
opened
9 months ago
2
Please update the docker image
#113
KevinDuringWork
opened
9 months ago
0
Extract all supported transcripts
#112
danlesperance-pki
opened
9 months ago
0
Core dump in Nirvana.dll
#111
wuttke
opened
10 months ago
2
problem with building the omim supplementary files
#110
GhisF
opened
11 months ago
0
create Cash files and reference files from other sources except nirvana
#109
naserelmi
opened
11 months ago
0
Error when Building the supplementary files from ClinVar
#108
TimPoulsen
closed
11 months ago
1
ERROR: Input string was not in a correct format. Windows 10
#107
EleniKamp
opened
1 year ago
0
Singularity & Nirvana
#106
yr542
opened
1 year ago
0
SpliceAI data missing from Supplementary Annotations
#105
kmurphy902
closed
11 months ago
1
v3.19 Production build annotates wrong transcripts as canonical
#104
jhkbg
closed
1 year ago
0
Wrong HGVSP annotation for some RefSeq sequences for GRCh37
#103
heseber
opened
1 year ago
6
dotnet Nirvana.dll command cannot find cache files
#102
iamgiddyaboutgit
opened
1 year ago
2
RefSeq Database Version
#101
malnirav
opened
1 year ago
21
Multiple entries for the same variant in custom databases
#100
algarsi3
opened
1 year ago
1
App crash if the chromosome name in -q is not present in the index
#99
Griffan
closed
1 year ago
1
How to update dbsnp version?
#98
Griffan
closed
1 year ago
1
Annotation of Structural Variants Unclear
#97
DarioS
opened
1 year ago
0
error running nirvana " System.Runtime.InteropServices.SEHException (0x80004005): External component has thrown an exception."
#96
anapg11
opened
1 year ago
0
Error in output format: the variantFrequencies field of the samples
#95
algarsi3
opened
1 year ago
1
Version 3.2.x branch no genes section in JSON
#94
olingerc
opened
1 year ago
0
Bump Newtonsoft.Json from 13.0.1 to 13.0.2 in /Cloud
#93
dependabot[bot]
opened
1 year ago
0
Bump Newtonsoft.Json from 13.0.1 to 13.0.2 in /Phantom
#92
dependabot[bot]
opened
1 year ago
0
Bump Newtonsoft.Json from 13.0.1 to 13.0.2 in /Jasix
#91
dependabot[bot]
opened
1 year ago
0
dannScore and gerpScore attributes use "," instead of "." when their value is a floating point
#90
algarsi3
opened
1 year ago
9
where is the Nirvana_UGA.tsv file
#89
vaksmaz
closed
1 year ago
1
Open reading frame in MNVs
#88
b-math
closed
1 year ago
3
Illegal Instruction
#87
alfonso-lam
opened
1 year ago
3
Looking for the within-callset AC, AN, AF for multi-sample VCF
#86
bw2
closed
1 year ago
1
Data for VariantStudio
#85
alfonso-lam
closed
1 year ago
1
[Feature Request] Docker image for latest NIRVANA version
#84
LeeTL1220
closed
1 year ago
5
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