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Illumina
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Nirvana
The nimble & robust variant annotator
https://illumina.github.io/NirvanaDocumentation/
GNU General Public License v3.0
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[Feature Request] Additional info during ClinVar parsing
#83
olingerc
opened
2 years ago
4
3.18.1 removes option "disable-recomposition". Not in release notes.
#82
olingerc
closed
2 years ago
2
Latest release (3.18.1) does not include Downloader
#81
olingerc
closed
2 years ago
5
variantFrequencies and alleleDepth are sometimes lost when annotating multi-sample VCF files
#80
heseber
closed
2 years ago
5
Object reference not set to an instance of an object.
#79
biodetective
closed
2 years ago
3
ERROR: Object reference not set to an instance of an object.
#78
MinjiaLU
closed
2 years ago
2
Gene referenced in transcript not present in genes section
#77
olingerc
opened
2 years ago
2
hg38 gerpScore database?
#76
hurrialice
closed
2 years ago
4
Clingen reciprocalOverlap and annotationOverlap attributes use "," instead of "." when their value is a floating point
#75
algarsi3
closed
2 years ago
1
Apple M1 : illegal hardware instruction
#74
jossefaz
opened
2 years ago
0
Jasix Error
#73
malnirav
closed
2 years ago
7
New variants added to my annotated VCF?
#72
anleopa
closed
2 years ago
1
How can I add my own database into Nirvana databases
#71
kpalanikannan
closed
2 years ago
1
How to update GRCh38 databases
#70
geocarvalho
closed
2 years ago
2
JSON schema for Nirvana output?
#69
Redmar-van-den-Berg
closed
2 years ago
1
Download GRCh38 databases for version 3.2.6
#68
geocarvalho
closed
2 years ago
3
Missing field PS from FORMAT
#67
olingerc
closed
2 years ago
2
Error creating custom gene file format
#66
anleopa
closed
2 years ago
1
JSONDecodeError: Expecting property name enclosed in double quotes
#65
matteofloris
closed
2 years ago
7
I'd like to use the latest version of gnomAD or at least version 3.0.
#64
RoriCremer
closed
2 years ago
1
Update SAUtils for Cosmic
#63
heseber
opened
2 years ago
0
MergedCosmicReader needs an update for new Cosmic releases
#62
heseber
closed
2 years ago
5
SAUtils conflicting entries in custom annotation
#61
heseber
closed
2 years ago
2
An error is thrown during custom annotation file creation that does not align with the UCSC Genome Browser
#60
RoriCremer
closed
2 years ago
2
Unable to clone git?
#59
vaipathak
closed
2 years ago
0
Nirvana_UGA.tsv file?
#58
ceftriaxoneBGD
closed
2 years ago
1
MNVs variants without variantFrequencies annotation
#57
geocarvalho
closed
2 years ago
1
Choice of version?
#56
JFL9421
closed
2 years ago
1
SAUtils conflicting entries in custom annotation
#55
IvantheDugtrio
closed
2 years ago
3
Unable to build on MacOS (or use the binaries)
#54
bw2
opened
2 years ago
0
Build Error
#53
LvLH
opened
3 years ago
0
Comparison between Nirvana 3.2.3 and 3.2.2
#52
MichaelStromberg
closed
2 years ago
0
Input string was not in a correct format
#51
AdamuUu
closed
2 years ago
3
Incorrect transcript hgvsc annotations
#50
michaelsykes
closed
3 years ago
3
Cytogenetic bands error when annotating COVID-19 VCF
#49
charbel-gem
opened
3 years ago
5
NIRVANA output missing genes.hgncid
#48
LeeTL1220
closed
3 months ago
4
"Illegal instruction" when running on NAS (x86_64) Ubuntu 18.04.5 LTS
#47
sorgoz
closed
3 years ago
3
Docker images for Nirvana 3.14+
#46
LeeTL1220
closed
3 years ago
6
parse json to csv
#45
fanyucai1
opened
3 years ago
1
Possible error / point of confusion around canonical variant IDs in docs
#44
edawson
closed
3 years ago
3
choosing one consequence from multiple annotation query
#43
prasundutta87
closed
2 years ago
3
Truncated supplementary data source files
#42
junyanzho
closed
3 years ago
4
Additional species
#41
rahulvrane
closed
7 months ago
7
Got Error when using nirvana to do annotate
#40
LvLH
closed
3 years ago
2
Please update schema version
#39
hakuliu
closed
3 years ago
1
Plans for upcoming cache data updates?
#38
WestleyASherman
closed
3 years ago
8
Usage manual/guide
#37
jerryliu2005
closed
3 years ago
1
Build failure on Ubuntu
#36
jerryliu2005
closed
3 years ago
1
JSON parsing. Am I on crazy pills?
#35
davemcg
opened
3 years ago
4
TestNirvana.sh
#34
camtorbri
closed
3 years ago
4
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