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**Describe the bug**
When using `cubi-tk sodar landing-zone-list` only a subset of all landing zones is listed, _i.e._ only ones marked as "ACTIVE". Version 0.4.0
**To Reproduce**
Steps to reprod…
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Hello, Dr. He. Sorry to bother you again.
I already knew that SEVtras would work with single cell RNA sequencing data produced by the 10x genomics chromium , which is based on droplet sequencing, but…
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**Is your feature request related to a problem? Please describe.**
Add a flag (e.g., --stop-after-stage1) to the workflow that, when passed by the user, return results of stage 1, and not proceeding …
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Hi there, I am having problems when trying to run minion_qc 1.4.2 with the sequencing summary generated by dorado (with the dorado summary command).
Normally, when the basecall is performed at sequ…
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check that this works
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Thank you for developing this tool; I think it might be very useful for sharing our research data.
I want to ask you for advice in applying `bamboozle` to bisulfite converted data.
Bisulfite trea…
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My understanding is one technique to avoid subject identification is by replacing dates with relative times from an arbitrary t0 time point and that's what we have done from most of the AIRR standards…
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Hi, I have a question:
my config.txt is like:
********************************************************************************
Project:
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Project name = Te…
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A questions arising from an ARMS meeting, where we discussed that the sequencing protocols from the ARMS-MBON era and the EMO-BON era are not 100% the same
Q: Will modifications in Genoscope steps/…
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**Describe the bug**
Hi, I am doing aggregate analysis for several regions in two samples (exp/wt). There is a clear difference in the enrichment. Unfortunately, the samples have different sequen…