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It'd be nice if we:
(a) made the point diameter use the actual spot diameter info from `SpaceRanger` See https://github.com/LieberInstitute/HumanPilot/blob/master/10X/151507/scalefactors_json.json …
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```
library(SpatialExperiment)
library(STexampleData)
library(scran)
library(nnSVG)
library(tidyverse)
library(msigdbr)
library(GSVA)
library(GSEABase)
library(SVP)
# 下载空转数据
# 数据说明：
# …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/kinnaryshah/spoon
Confirm the following by editin…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/waldronlab/VisiumIO
Confirm the following by edit…
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Hi,
With `pkgdown` version 2.1.0, I'm running into the following error when using `pkgdown::deploy_to_branch()`.
```R
Error in `build_reference()`:
! Failed to parse Rd in vis_gene_p.Rd
Caus…
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Hello spatialDE package developer,
I wanted to bring to your attention an issue that I am running into when trying to use this package. I was not able to run the spatialDE function on my SpatialExp…
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Hi,
I am trying to follow the tutorial to run Banksy from a Seurat object (https://github.com/satijalab/seurat-wrappers/blob/master/docs/banksy.md). When I run the code below I am met with an error…
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Hi,
First of all, thank you so much for providing this very useful tool. I've been using Seurat package since version 3, and recently jumped into Visium data so I'm still learning how to proces…
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I noticed some strange behavior in `vis_grid_clus()` when trying to plot logical variables such as `in_tissue`, the same variables plot as expected in `vis_clus()`. Converting the lgl to factor does n…
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Thanks for the nice package!
I've been using `vis_grid_clus` to plot multiple samples together. I noticed the legends representing levels of `clustervar` are always turning to numbers instead of sh…