-
I put `model_best.model` and `model_best.model.pkl` to the folder:
`xxx/project/nnFormer/DATASET/nnFormer_trained_models/nnFormer/3d_fullres/Task003_tumor/nnFormerTrainerV2_nnformer_tumor__nnFormerP…
-
Hi,
I have some problems with MANTIS. I can't finish the process. I used WGS data (70 Gb - normal and 150 Gb - tumor) and 3 mln rows of loci bed basing on hg38 genome.
Also I used only chr16 fro…
-
I am currently working on a tumor bulk RNA-seq data set in order to identify somatic mutations. I have the BAM file for the tumor data set but I do not have the BAM file for a normal sample. Is there …
ghost updated
2 years ago
-
### Need
As a clinician I want to be able to detect all true somatic variants, but currently in WGS-tumor-only cases we are filtering out all somatic variants with a VAF of 1 with a bcftools filter…
-
### Description of the bug
CGI biomarkers.tsv contains two columns `Match` and `BioM`.
- we used to filter biomarkers for `BioM == "complete"`, now we filter for `Match == "YES"`, but we need both…
-
`chr19 4856354 Minda_62 N . PASS SVLEN=4485;SVTYPE=DEL;SUPP_VEC=ONT_severus_DEL3605,ONT_Sniffles2.DEL.A8M12,PB_ID_62144_2,PB_severus_DEL3193
`
https://v2.genomeribbon.com/?session=https://42basepair…
-
```
Explanation attached - though it's not helpful.
This is the problematic axiom:
'material pathological entity'
SubClassOf
'part of continuant at some time' only
('extended organism'
an…
-
Hi @diazlab and @soerenmueller
I want to predict tumor cells in Suva’s 2014 IDH wt Glioma dataset, for which I only have log2tpm values. How can we convert log2tpm to log2cpm or is there a way to us…
-
Context of issue:
When we do trait mapping (automated and manual), we use [only preferred names](https://github.com/EBIvariation/eva-opentargets/blob/master/cmat/trait_mapping/trait_names_parsing.py#…
-
Note that I'm not looking at the code super carefully, but here's a few things I noticed when running the code:
## R:
- Script doesn't save figures (see [this](https://github.com/davidjwen/sp22_q…