bioinform neusomatic issues

bioinform / neusomatic

NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection

Other

168 stars 50 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Any plan to train NeuSomatic models in long-read platforms?

#87 zhengzhenxian opened 11 months ago
0
Inputs for docker image Variant call ( --checkpoint )

#86 kiranpatil222 opened 1 year ago
2
RuntimeError: cuDNN error: CUDNN_STATUS_MAPPING_ERROR

#85 LeiHaoa closed 2 years ago
1
Zero coverage SNVs and their relation to deletions

#84 emucaki closed 2 years ago
5
Fail in installing step

#83 baoyl818 opened 2 years ago
0
Error when running build.sh

#82 atharva-bhagwat closed 2 years ago
2
How to get the vaildation tsv?

#81 wangjiangyuan opened 2 years ago
1
How to deal with multiallelic variants?

#80 leedchou opened 2 years ago
0
training using bamsurgeon on multiple samples

#79 kiranchari opened 2 years ago
0
adapt for ultra-deep sequencing data

#78 WeiweiBian opened 3 years ago
0
Exception: scan_alignments failed!

#77 shiying-sxu opened 3 years ago
0
Formatting scan alignments c++ code using clang-Google formatter

#76 pavan-kotha-strandls opened 3 years ago
0
Run preprocess.py on Colab

#75 BlinkPSAhad opened 3 years ago
0
Skipping multiprocess pool for single thread scenario

#74 pavan-kotha-strandls opened 3 years ago
2
Formatting python scripts with black auto-formatter

#73 pavan-kotha-strandls opened 3 years ago
1
Dev 1

#72 pavan-kotha-strandls closed 3 years ago
3
Accelerate preprocess

#71 msahraeian opened 3 years ago
0
The meaning of the input parameters

#70 chloezhu closed 3 years ago
0
How to produce synthetic training data with different tumor purity and normal contamination ratio?

#69 ZekunYin closed 3 years ago
2
Ensemble mode issue

#68 JunhakAhn opened 3 years ago
1
/bin/scan_alignments Not Found

#67 ghost opened 4 years ago
1
which validate script you use?

#66 LeiHaoa closed 4 years ago
2
testing pretrined model

#65 bingdiao-zbw opened 4 years ago
7
Test fail

#64 vymao closed 4 years ago
1
Extended standalone

#63 msahraeian opened 4 years ago
2
How to access CGC files?

#62 GolfDeltaFox opened 4 years ago
1
Multi-patient training

#61 chrissype opened 4 years ago
2
Error: unable to open file or unable to determine types for file synthetic.vcf

#60 gianfilippo opened 4 years ago
31
Postprocess dedup filter

#59 msahraeian opened 4 years ago
1
added singularity for ensemble docker pipelines

#58 msahraeian closed 4 years ago
0
Remove pybedtools dependency

#57 msahraeian opened 4 years ago
0
support for singularity?

#56 GodloveD closed 4 years ago
2
AssertionError on fast_file.fetch()

#55 GodloveD closed 4 years ago
5
Train.py Runtime Error

#54 apptest20 closed 4 years ago
2
failed at the last step

#53 cbiitbian opened 5 years ago
23
OSError: [Errno 12] Cannot allocate memory

#52 jingmeng-bioinformatics opened 5 years ago
2
It takes several days to preprocess BAM files for testing

#51 jingmeng-bioinformatics opened 5 years ago
2
truth somatic variant .vcf file

#50 yueyangtime opened 5 years ago
3
undefined symbol: _ZN3c107Warning4warnENS_14SourceLocationENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE

#49 jingmeng-bioinformatics closed 5 years ago
2
Model training

#48 kokyriakidis opened 5 years ago
1
preprocess unable to find candidates for training

#47 SchKri closed 5 years ago
2
add inline comments

#46 roger-liu-bina opened 5 years ago
0
How could I use different NT samples to train some times，and then call variants

#45 ggoodstudydaydayup closed 5 years ago
2
Updates to v0.2.1

#44 msahraeian closed 5 years ago
4
More prog opts

#43 roger-liu-bina closed 5 years ago
0
Regarding the necessity of normal.bam file

#42 ghost opened 5 years ago
5
pybedtools tmp fixed

#41 msahraeian closed 5 years ago
0
Getting compilation error with latest codebase on Mac OS with gcc/g++ 9

#40 yakneens opened 5 years ago
1
small VCF fix

#39 msahraeian closed 5 years ago
0
Fix ensemble parser

#38 msahraeian closed 5 years ago
2