bioinform neusomatic issues

bioinform / neusomatic

NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection

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Any plan to train NeuSomatic models in long-read platforms?

#87 zhengzhenxian opened 8 months ago
0
Inputs for docker image Variant call ( --checkpoint )

#86 kiranpatil222 opened 1 year ago
2
RuntimeError: cuDNN error: CUDNN_STATUS_MAPPING_ERROR

#85 LeiHaoa closed 1 year ago
1
Zero coverage SNVs and their relation to deletions

#84 emucaki closed 2 years ago
5
Fail in installing step

#83 baoyl818 opened 2 years ago
0
Error when running build.sh

#82 atharva-bhagwat closed 2 years ago
2
How to get the vaildation tsv?

#81 wangjiangyuan opened 2 years ago
1
How to deal with multiallelic variants?

#80 leedchou opened 2 years ago
0
training using bamsurgeon on multiple samples

#79 kiranchari opened 2 years ago
0
adapt for ultra-deep sequencing data

#78 WeiweiBian opened 2 years ago
0
Exception: scan_alignments failed!

#77 shiying-sxu opened 3 years ago
0
Formatting scan alignments c++ code using clang-Google formatter

#76 pavan-kotha-strandls opened 3 years ago
0
Run preprocess.py on Colab

#75 BlinkPSAhad opened 3 years ago
0
Skipping multiprocess pool for single thread scenario

#74 pavan-kotha-strandls opened 3 years ago
2
Formatting python scripts with black auto-formatter

#73 pavan-kotha-strandls opened 3 years ago
1
Dev 1

#72 pavan-kotha-strandls closed 3 years ago
3
Accelerate preprocess

#71 msahraeian opened 3 years ago
0
The meaning of the input parameters

#70 chloezhu closed 3 years ago
0
How to produce synthetic training data with different tumor purity and normal contamination ratio?

#69 ZekunYin closed 3 years ago
2
Ensemble mode issue

#68 JunhakAhn opened 3 years ago
1
/bin/scan_alignments Not Found

#67 ghost opened 3 years ago
1
which validate script you use?

#66 LeiHaoa closed 3 years ago
2
testing pretrined model

#65 bingdiao-zbw opened 4 years ago
7
Test fail

#64 vymao closed 4 years ago
1
Extended standalone

#63 msahraeian opened 4 years ago
2
How to access CGC files?

#62 GolfDeltaFox opened 4 years ago
1
Multi-patient training

#61 chrissype opened 4 years ago
2
Error: unable to open file or unable to determine types for file synthetic.vcf

#60 gianfilippo opened 4 years ago
31
Postprocess dedup filter

#59 msahraeian opened 4 years ago
1
added singularity for ensemble docker pipelines

#58 msahraeian closed 4 years ago
0
Remove pybedtools dependency

#57 msahraeian opened 4 years ago
0
support for singularity?

#56 GodloveD closed 4 years ago
2
AssertionError on fast_file.fetch()

#55 GodloveD closed 4 years ago
5
Train.py Runtime Error

#54 apptest20 closed 4 years ago
2
failed at the last step

#53 cbiitbian opened 4 years ago
23
OSError: [Errno 12] Cannot allocate memory

#52 jingmeng-bioinformatics opened 4 years ago
2
It takes several days to preprocess BAM files for testing

#51 jingmeng-bioinformatics opened 4 years ago
2
truth somatic variant .vcf file

#50 yueyangtime opened 4 years ago
3
undefined symbol: _ZN3c107Warning4warnENS_14SourceLocationENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE

#49 jingmeng-bioinformatics closed 4 years ago
2
Model training

#48 kokyriakidis opened 5 years ago
1
preprocess unable to find candidates for training

#47 SchKri closed 5 years ago
2
add inline comments

#46 roger-liu-bina opened 5 years ago
0
How could I use different NT samples to train some times，and then call variants

#45 ggoodstudydaydayup closed 5 years ago
2
Updates to v0.2.1

#44 msahraeian closed 5 years ago
4
More prog opts

#43 roger-liu-bina closed 5 years ago
0
Regarding the necessity of normal.bam file

#42 ghost opened 5 years ago
5
pybedtools tmp fixed

#41 msahraeian closed 5 years ago
0
Getting compilation error with latest codebase on Mac OS with gcc/g++ 9

#40 yakneens opened 5 years ago
1
small VCF fix

#39 msahraeian closed 5 years ago
0
Fix ensemble parser

#38 msahraeian closed 5 years ago
2