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```
$ pyseer --version
pyseer 1.3.9
```
When running a lasso classification on some E. coli genomes I get the following error (the value of `--cor-filter` is irrelevant)
```
$ pyseer --pheno…
-
Hello,
I am currently using metaMDBG for assembling metagenomic reads. I have encountered an issue where the unitigs.fasta.gz file is not generated during assembly. I have installed metaMDBG by build…
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Hi @alekseyzimin,
While running Masurca (version 3.3.9) I encountered an error:
```
./assemble.sh
[Mon 27 Jul 20:37:59 CEST 2020] Processing pe library reads
[Mon 27 Jul 20:37:59 CEST 2020] A…
-
Hello,
I have run the following commands:
minimap2 -x ava-ont -t32 reads.fastq reads.fastq -K5M | gzip -1 > n_reads.paf.gz
[M::mm_idx_gen::0.754*0.99] collected minimizers
[M::mm_idx_gen::0.858…
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once we have some pretty clear contaminants nailed down with this tool, we could try doing additional validation by using spacegraphcats. The basic question would be, are potential contaminant contigs…
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Hi, Jamshed @jamshed
Thanks for cuttlefish giving me a new way to build cDBG in a very fast speed. I have one question after reading your paper. I noticed that you find the maximal unitigs by trav…
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I have executed the command ./install.sh, but I got the following error. Anyone knows how can I solve this problem?
----------------------------------------------------------------------
make[3]: …
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Hi, I've been running into situations where the warning `WARNING: No newline at ending of file 'nonewline.fasta'` from ggcat causes issues in tools that use ggcat output because the generated outputs …
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The catlas output files are described at a couple places. I found [this page](https://spacegraphcats.github.io/spacegraphcats/01-running-spacegraphcats/) the most comprehensive. However, the descripti…
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Hi Kangxiongbin,
Thank you for developing this impressive software. Utilizing both short and long reads for metagenomic assembly is a fantastic approach! However, I encountered some issues while us…