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Email sent from Biowulf staff on 11/9
```
Hello,
You are receiving this e-mail because you have access to one or more data directories on the newest HPC all-flash storage system. The HPC staff ha…
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**Describe the bug**
Installations on NIH's Biowulf cluster are read-only-- in particular, I'm trying to build a singularity container for antismash (with a native interface--to appear as a bare meta…
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Sample
```
SJ000026/SJRHB026_R ngs_pipeline_SJ000026=SJRHB026_R=20220911
```
Error:
```
/data/khanlab2/processed_DATA/ngs_pipeline_SJ000026=SJRHB026_R=20220911_20221220_005856.log
Error in ru…
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create dockers for MVP ... get list from Vineela
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Error in rule [SNPEff](https://github.com/CCRGeneticsBranch/ngs_pipeline_4.2/blob/ba1f079fd2119dba9e6128c99e36d3c6f705ea3c/ngs_pipeline.rules#L873)
Example error log:
```
/data/khanlab/projects…
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Currently the pipeline is using the ${{LOCAL}} variable within many of its rules. This location is being used as the site for intermediary and temporary storage of files. This is not the most efficien…
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### What happened?
Hi,
I am getting an error when using a workflow EPI2ME in nextflow. I used the command as it is described on the GitHub page and –the help tutorial. It requires an input file a…
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Create docker for it and add it to the pipeline!
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Xinyu reported BWA error on SJOS001105
```
[M::mem_process_seqs] Processed 3000000 reads in 469.121 CPU sec, 18.419 real sec
[samopen] SAM header is present: 176 sequences.
[sam_read1] reference…
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Problem: Multiple errors seen across a significant number of samples in latest sample run.
Example errors from log `/data/khanlab2/processed_DATA/ngs_pipeline_SJ031111=SJEPD031111_D1=20220911_20221…