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khanlab_ngs_pipeline
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Create template for reporting bugs/errors for khanalab ngs pipeline
#57
vinegang
closed
1 year ago
0
pipeline error on Sequenza
#56
xinyuwen
opened
1 year ago
1
pipeline 4.3 error
#55
xinyuwen
opened
1 year ago
0
pipeline error 2
#54
xinyuwen
opened
1 year ago
1
Dev
#53
vinegang
closed
1 year ago
0
added a step to delete the intermediate picard bam, to save space on …
#52
vinegang
closed
1 year ago
0
Dev
#51
vinegang
closed
1 year ago
0
bug fix: updated the bind directory path
#50
vinegang
closed
1 year ago
0
bug fix: updated the bind directory path
#49
vinegang
closed
1 year ago
0
Dev
#48
vinegang
closed
1 year ago
0
updated the --limitSjdbInsertNsj parameter
#47
vinegang
closed
1 year ago
0
Dev
#46
vinegang
closed
1 year ago
0
updated Fusion catcher version and added command line option for --li…
#45
vinegang
closed
1 year ago
0
Attribute error
#44
vinegang
closed
1 year ago
1
Dev
#43
vinegang
closed
1 year ago
0
Feature/strandedness
#42
vinegang
closed
1 year ago
0
Dev
#41
vinegang
closed
1 year ago
0
Feature/qc
#40
epehrsson
closed
1 year ago
1
Dev
#39
vinegang
closed
1 year ago
0
updated the logic to add RNAseq filter for cnvkit
#38
vinegang
closed
1 year ago
0
Dev
#37
vinegang
closed
1 year ago
0
Updated the logic to run cnvkit for Tumor-normal, Tumor only and Norm…
#36
vinegang
closed
1 year ago
0
logic for cnvkit is incorrect.
#35
vinegang
closed
1 year ago
1
updated BWA command line
#34
vinegang
closed
1 year ago
0
BWA Error on SJOS001105 sample
#33
vinegang
closed
1 year ago
4
updated samtools sort command
#32
vinegang
closed
1 year ago
0
Dev
#31
vinegang
closed
1 year ago
0
Dev
#30
kopardev
closed
1 year ago
0
Revert "Revert "Dev""
#29
vinegang
closed
1 year ago
0
Revert "Dev"
#28
vinegang
closed
1 year ago
0
Dev
#27
vinegang
closed
1 year ago
0
STARens: Unsorted positions
#26
vinegang
closed
1 year ago
0
Dev
#25
vinegang
closed
1 year ago
0
No cnvkit ouput for MTC001 case ids
#24
vinegang
opened
1 year ago
0
Arriba error at draw_fusions_patch.R
#23
vinegang
closed
1 year ago
2
Arriba re-running STAR
#22
kopardev
opened
1 year ago
0
fusion_annotation cytoband
#21
kopardev
opened
1 year ago
0
Arriba error during draw_fusions.R
#20
slsevilla
closed
1 year ago
2
STAR ENS error
#19
slsevilla
closed
4 months ago
6
snpEff -db error
#18
slsevilla
closed
1 year ago
1
ARRIBA persistent failure
#17
slsevilla
closed
1 year ago
0
mixcr_RNASeq persistent error
#16
slsevilla
closed
1 year ago
1
FUSION CATCHER persistent error
#15
slsevilla
closed
1 year ago
1
Review ${{LOCAL}} variable and remove - set to output directory
#14
slsevilla
closed
1 year ago
2
Errors seen across multiple samples related to memory
#13
slsevilla
closed
1 year ago
2
Potential Data Inconsistencies on One Biowulf Filesystem
#12
slsevilla
closed
1 year ago
1
Move logs to project specific directory
#11
slsevilla
closed
1 year ago
2
fix missing OUTPUT error
#10
slsevilla
closed
1 year ago
0
STARens error related to PICCARD OUTPUT
#9
slsevilla
closed
1 year ago
1
Updates to STAR_ENS
#8
slsevilla
closed
1 year ago
0
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