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What ensembl version of the transcriptome has been used to make the hg38_cdna/salmon_index:default (archive_digest: b7cd1d94b858bfc1cdd73d4901f01fb0)?
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I know the genomic DNA sequence is in the ENA, but I want to take a look at the RNA data.
http://s3.amazon.com/nanopore-human-wgs/ just brings up the AWS management console.
I've tried the comm…
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When editing a variant entry, one can enter conflicting descriptions on cDNA and genomic level. LOVD does not show show any warning when submitting the form.
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Hello All,
I am receiving following error while running the Family finding step of Cogent for a large dataset. Kindly suggest.
_input file:_
isoseq_flnc.fasta
_command:_
python /path/to/cDNA…
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Hi,
I am running over the tutorial of 'RNA velocity with kallisto | bus and velocyto.R'.... and I have two lines that I can't run:
`bustools capture -o cDNA_capture/ -c ./cDNA_tx_to_capture.txt -e…
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Hi guys,
I'm trying to pre-process my fastq file to get loom files. I'm working on mouse models, so I followed kallisto to build index for ref, I split the index into 8 parts (-n 8). When I ran pre…
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Hi, I notice that the block size in gpu-latency is 64 rather than 32 (warp size) or a single thread. Is there any consideration to set as 64? Looking forward to your reply:)
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### Description of the bug
Hi!
I'm running the pipeline with the following pipeline:
```
nextflow run nf-core/circdna \
-r 1.0.4 \
-profile docker \
-resume \
--max_cpus 9 \
--max_memory …
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### Ask away!
Hi, I'm trying to specify the minimap2 parameter '--junc_bed' with a bed file of splice annotations to ensure the correct splice sites are mapped around my gene of interest, which is so…
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Hi Brian,
Thank you for providing such wonderful tool. I am new with PASA, and want to use it for both alignment assembly and annotation update.
For the alignment assembly section, I have three …