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There is some slice-to-volume movement.
Suspect that the b0APPA that was put…
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Hi, I wanted to ask if you are planning on including other modalities in ezbids?
Background: I work as a Data Steward for two large collaborative research center in Germany. We have many different…
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1.
```
/software/rocky9/CNN-Diffusion-MRIBrain-Segmentation/tests/../pipeline/dwi_masking.py:40: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/p…
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After a successful run of `pytest` I noticed that 172 files were created in my working directory. Not a big deal, but it would be nice to cleanup after running the tests.
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Here is sub-NENAH004
Comes from here in `preprocess.sh`
```
if [ ! -f mask.mif.gz …
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### What happened?
dmriprep version: dMRIPrep v0.5.0+30.g510ed0ea
Python version: Python 3.7.1
Operating System: Docker
I run the following commands: git clone https://github.com/nipy/dmriprep, …
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Hi!I am a student learning fiber tracking and I'm really interested in this work. I have tried several training experiments using scripts. When I try to train from raw diffusion dataset(**ismrm2015_ra…
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### Description
> This is a follow-up to #3229. A bandaid fix was applied in #3230, but the root cause is deeper.
If an image has non-zero float values, and that image is saved and reloaded, the…
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Current size with a fresh clone is:
~~~
169M sct/
156M sct/.git
~~~
I suggest we remove some fat?
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Some head-motion metrics from fMRI can be directly applied (e.g., framewise displacement), but in the case of dMRI I think it would be interesting to have a metric reporting the differences between th…