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Dear Vadim,
Thanks for your such a great software!But I have had a couple of issues with it.
1. I have used FASTA digest and deep-learning options to generate .predict.speclib file based on the FA…
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Hi,
Thanks for the useful tool. Would it be possible to add the option to modify the headers of the output fastq files? I can see in `aligner.py` that the (final) command for generating clean reads…
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How can we use protein sequence as receptor input and ligand smiles file as a ligand input?
I tried to use fasta format or txt format for the sequence of my protein but I got an error as " can only j…
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> I would like to use NIST website (https://www.ncnr.nist.gov/resources/activation/) to calculate SLD of a protein containing phosphoserine. I have tried filling amino acid sequence of a protein on th…
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I'm following the database installation procedure here to run the pipeline (https://blobtoolkit.genomehubs.org/install/#databases).
I was successfully able to download the nt data. However, the u…
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For the `gliph-group-discovery` command, an option can be supplied as outlined in the documenation with the following example: `--refdb=mouseDB.fa`.
However, there is no example file provided on w…
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I tried to run kmc (version 3.2.2) on fasta files downloaded from the NCBI ftp server.
The program gave only the following error message:
Error: unknown exception
After many hours I tried to chan…
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After updating to 0.4.3, genome_fetcher.py reported error:
```
DAJIN2 --control barcode01 --sample barcode02 --allele actc1L_cont_knockin.fa --name 02 --genome xenLae2 --threads 8
2024-03-29 11:48…
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hello, thank you for creating "[ncbi-genome-download]".
I have a issue .I use commond line" ncbi-genome-download --formats fasta viral" to load refseq virus,it is 1847 complete squeuces in total,is i…
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When I did the first step with mirdeep2, which is to map the sequencing data to the genome, I encountered a problem:
First line of FASTA reads file is not in accordance with the fasta format specif…