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This might be outside of the scope of the project, but I thought it could be a nice addition. There's a modified version of hmmseach (https://github.com/Larofeticus/hpc_hmmsearch) that runs *way* fast…
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The `v0.1` version of QDMI had dedicated routines for calibration
```c++
int QDMI_device_quality_check(QDMI_Device dev, double *result);
int QDMI_device_quality_limit(QDMI_Device dev, double *resul…
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It would be a luxury to have a check on buildstock commands dependent on which HPC you are using. That is to say, a command like `buildstock_eagle` will not run if you are logged into Kestrel.
This…
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in many debates around hpc-carpentry, people start to ask for more advanced material on MPI library Z or parallelisation paradigm/library Y or accelerator X. I ackowledge that this "featuritis" is ine…
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The HPC intro lesson is nice. However most Carpentries workshops are about 16 hours long and composed of 4 lessons of about 4 hours each, typically three of these lessons in a carpentries module are c…
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**hpc-config-apply** should be installed automatically with **scibian-hpc-base**.
it is not the case.
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## Bug report
### Expected behavior and actual behavior
Hi Nextflow team,
I expected that the order in which 'includeConfig' and 'profiles' are declared in nextflow.config would have no effe…
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This is an example `.slurm` script I use for my job array. Assuming that I have a list of hundreds of command lines that can be run in parallel (i.e., they're independent of each others). All command …
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Hey everyone,
First time posting here so let me know if I did not do it correctly or need to add more information.
I am dealing with a performance issues switching from my local machine to an HP…
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Need to have a script that will tell us if we missed any steps for species which should successfully complete the workflow. Need to:
- [x] Establish criteria for which species should complete the w…