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Hello,
Recently, I was running the GFFcompare and found some confusing results.
The query file has one single-exon transcript which is slightly different from the reference file at the boundary, and…
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Hi Andy,
Thanks for developing the cool platypus.
I discover that there is no genotype likelihood for multi-allelic loci and this causes problem when applying beagle to phase the variants.
Do you thin…
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Dear Armando and fellow users,
I come across GONE and it's very interesting for me because I'm specifically interested in the most recent Ne of my populations (
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Hi Dr Anderson,
I have a dataset with 2422 SNPs generated from ddRADseq across 104 individuals. I have removed linked loci but I do have a considerable amount of missing data (11.5%). I'm getting the…
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We stumble had an error on a large jpeg image (6 624 x 40 653 px, 214 MB) when calling `showinf` (through `omero transfer prepare`)
Here is the trace:
```
Exception in thread "main" java.lang.…
glyg updated
7 months ago
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Hello,
There is a well characterized CAG repeat in the ATXN3 gene (exon 10). The latest variant catalog does not have that. Could you please tell me whether it is advisable to add the entire exon (…
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These repos with Dockerfiles would benefit from having built images on docker hub for use:
* loci-cache-scripts,
* loci-integration-api,
* loci-notebooks,
* gds,
* excelerator
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Somebody in gitter reported trim_loci wasn't working for the distal end of R1 and i checked and it is true that it's not doing anything. In debugging this I see this code in write_outfiles:
```
…
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Hello，I have encountered an issue when running AlleleCall to the genomes. It said "AttributeError: 'NoneType' object has no attribute 'seq'", what's the matter, thank you!
$ chewBBACA.py AlleleCall…
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Simple simulation
- K: 1 & 2
- Ne: 50, 500 (retain all individuals)
- loci: 10,000 SNPs, 20 microsats
Harmonic mean of replicates
Quantify variance
If estimator is biased due to thous…