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Hello,
Thanks for developing this software!
I'm trying to run Remora with Megalodon with the following command:
```
megalodon ecoli_ci_test_fast5 --guppy-config dna_r9.4.1_450bps_fast.cfg --re…
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Hi all,
Thank you so much for developing this amazing pipeline!
I just tried to run the pipeline with the following command line and it seems to run at the first time, but it soon stops but with…
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At step 5 of the "Testing basecalling and mapping." section from https://github.com/LooseLab/readfish/tree/guppy_6, I get the following error:
```
readfish targets --device MN22761 …
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Hi,
I repeatedly encountered this error and I don't seem to be able to pinpoint the problem.
I'm running canu on a linux grid, with SLURM jobs, 1 node, 2x 18 cores, 500Gb and enough storage space…
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Hi,
I understand that the CHM13 nanopore datasets were generated at 4 different sites with PromethION sequencing done at UCD (runs 225 and 226), and MinION/GridION was presumably done at the other …
ktan8 updated
3 years ago
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canu stopped after running for many days..
` canu -d assembly -p LR genomeSize=2.25g useGrid=true gridEngine=slurm gridOptions="--time=7-00:00" \
-nanopore ../../Data/Lolium/Clean/Minion/nano-pre.…
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I am now running through real data now.
During basecalling, there is a fast5 files are loaded into a common separately and sequentially. Is this correct and if so is there a reason for this?
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I am just starting with eukaryotic genome assemblies in slurm. Could you please help me in setting a slurm job through a batch script for canu/2.1.1 (or if anything would change in the script when we …
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| Name | Description | Size | Format | URL |
| --- | --- | --- | --- | --- |
| World Bank - Light Every Night | Light Every Night - World Bank Nightime Light Data – provides open access to all night…
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Recently me and @Psy-Fer encountered an issue where we wanted to install a particular version of MinKNOW on a new PC (aka the mini-fridge) for readfish and realised nanopore only provides the latest v…