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Hello, I have been using Gistic2 for a few weeks and usually run it using gene pattern. However, I would like to know how to highlight specific genes (for now I get chromosome locations) to the peaks …
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I ran HMMRATAC on two samples that should be biological replicates. The quality difference between them is high, although the quality is far from ideal for both. However, the low quality sample produc…
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## Bug description
When using peaks that vary from 0.1 to 1 the top boundaries are not respected, and the waveform overflows into the labels.
## Environment
- Browser: Chrome
## Minimal code …
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### Describe your issue.
When I run `find_peaks` on an array of length `378834`, scipy misses a few peaks that it detects if I pass it only an excerpt of the array containing that missed peak.
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Currently when editing peaks users are required to drag and select a range to remove / delete peaks. It might be nice to add functionality to allow for simply clicking a peak to mark it for removal / …
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There seems to be more than one solution in the absence of selection, as my attempt at running the script in the "Quick Start" tutorial led to a saddle shape rather than the expected 2D shape.
Code…
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I found it very slow when I used a 30k scATACK-seq data with top 50k peaks, how many peaks should I use for the input of scATAC-seq data?
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Hi, I made a bulgarian translation. I checked the issue with the russian translation for the strings, so do let me know if I've missed something. You can use the same alphabet you drew for russian, si…
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It doesn't seem to be heap or cpu bottleneck. So what is the actual bottleneck, is it IO cost, due to lookups? If so we need a metric for it.
Or is it skew? because in some scenarios, the workload …
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Hello,
I found that when using insert-segment mode, if you click close to the border, there is a chance that the following error may be triggered.
https://github.com/user-attachments/assets/09cf…