-
https://github.com/ICB-DCM/pyPESTO/actions/runs/6903540764/job/18782434139
```python
_____________________________ test_problem_select ______________________________
pypesto_select_problem =
…
-
I have been disucssing with Sebastian at https://github.com/sebapersson/PEtab.jl/issues/61 regarding direct integration between Catalyst and PEtab.jl for parameter calibration. I think we quite soon s…
-
I have tried to make PEtab.jl work together with ProfileLikelihood for user provided gradients (see #95 ).
It works well if I use an algorithm that only uses gradient (like BFGS from NLopt) (I can…
-
Running a basic analysis like:
```python
problem = Problem.from_yaml(args.yaml_file_name)
best = evaluate_problem(problem,
temp_dir=args.output_dir,
delete_temp…
-
Currently we do not support plotting of the model fit against the data for each observable and simulation condition. This should definitely be added, and could make a first good issue.
Technically,…
-
Have regular reports on code coverage, e.g. via codecov
-
Importing Raia_CancerResearch2011 fails since https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/197
e.g. https://github.com/AMICI-dev/AMICI/actions/runs/7207106512/job/19633280…
-
Looked in the docs, but could not find a verbose argument for this (although I found for other stuff). E.g. in documentation it would be nice to turn fo for e.g.:
![image](https://github.com/sebapers…
-
Hi,
I tried to install AMICI in a conda environment on my Mac. I followed the [installation instructions](https://amici.readthedocs.io/en/latest/python_installation.html), and I installed all of th…
-
https://github.com/ICB-DCM/pyPESTO/actions/runs/6945543894/job/18895149022
```python
_____________________ test_error_leastsquares_with_ssigma ______________________
def test_error_leastsqu…