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Currently the `rule featurecount` looks as follows:
```
threads: 4
params:
setting=lambda wildcards: "-Q 10 -B -p" if wildcards.seq_type == "pe" else ""
```
```
shell:
…
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### Description of the bug
even though I run pipeline from writable location on HPC cluster, it still complains about problems with installing Eukulele dependencies... I have checked and diamond is i…
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Hi,
When I try to identify the pi and FST parameters with the gff file. The tool print the following error:
### Reading GFF file ###
Reading Input_POGENOM/RAW_DATA/Genomes/PATOS/1T0.BINS_5.001.gf…
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Hi，
I am not sure what I should input.
For example: I have some contigs "test.fasta"
>contig1
ATCGATCGTTG
First, I use prodigal to predict the genes of contig and get the "test.fna" file
…
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Could any one please let me know why the script is not running properly for me when trying to extract the protein sequences after gene prediction using prodigal
my command was
**bash ..//../scri…
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I have followed the instructions in the readme for downloading the databases but now I'm trying to run camitax on real genomes and I get a lot of errors:
```
nextflow run CAMI-challenge/CAMITAX -p…
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Hello,
I keep on getting a "GFF file is not in GFF3 file format!" error while running `samtools mpileup` + `ivar variants`. This is the command line:
```bash
samtools mpileup \
-aa -A -B \
--…
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Hi,
I would like to see the partial genes and the complete genes when performing metagenomic analysis. Is there a way to identify both?
Thanks,
micromania
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Hi,
I'm testing out your new tool after having come across your interesting paper. I get the weird error `Metascan needs signalp 3.0 or higher` (see below for full log) for signalp despite having …
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A small project to improve anvi'o, based upon feedback/ideas @FlorianTrigodet and I heard from our colleagues at the QIB in Norwich.
## The need
We already have a great documentation system inte…