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I am trying your vingette with a Seurat object which is scRNA + scATAC combined. But I get the following error message when I run PairCells(). My scMEGA part of my code is below:
coembed.sub
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Hey dev team,
I am wondering whether the built in inference model will identify Inosine signals as m6 Adenosine signals? From you professional opinion, would m6Anet be able to be trained to pick up…
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Hello!
I got the following strange error message when trying to run the function `create_domino()` in an R script:
```
Error in features[, colnames(dom@z_scores)] : subscript out of bounds
Cal…
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**Describe the bug**
In calculate_TFs_to_genes_relationships(), after initialization, throws this error:
Traceback (most recent call last):
File "", line 1, in
File "/home/ubuntu/scenicplus…
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Nice work, I want to know what does the motif files under motif_lists directory represent?
cisbp_motifs_wmax.txt
compendium_motifs_wmax.txt
homer_motifs_wmax.txt
jaspar_motifs_wmax.txt
prte_motif…
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I ran the [Joint RNA and ATAC multiomic tutorial](https://stuartlab.org/signac/articles/pbmc_multiomic.html) till the Peak Calling and added MACS2 peak set to the Seurat Object (d149 in this case) and…
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As part of this ticket: https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/591
**sterol_regulatory_element SO:0001861**
**Parent term name and accession**
promoter_element SO:0001659…
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Hello @adbailey4 ,
I get 0 outputs when I run :
```
runSignalAlign.py run --config `pwd`/yeast_rrna_modification_detection/testing/inference.config.json
```
```
[SignalAlignment.run] NOT…
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https://mp.weixin.qq.com/s/YFqLko9q-YYJ9jkhP3Wsww
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Dear ViennaRNA community,
I'm trying to Dockerize the ViennaRNA package and have run into a some odd behaviour that seems to be specific to running in a container environment.
The operating sys…