Bioconductor MatrixGenerics issues

Bioconductor / MatrixGenerics

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

https://bioconductor.org/packages/MatrixGenerics

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issues

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Check and normalize 'center' argument before passing down to matrixStats

#38 hpages closed 5 months ago
2
Extend rowWeightedVars() to handle a matrix of weights

#37 GabrielHoffman closed 9 months ago
3
Update documentation of useNames in BioC 3.18

#36 PeteHaitch closed 11 months ago
2
Update documentation of useNames in BioC 3.18?

#35 PeteHaitch closed 11 months ago
2
Patch 1.12.1 not 100% backward compatible

#34 const-ae closed 1 year ago
2
Apply matrixStats 1.0.0 breaking change for 'useNames' default [PR against devel]

#33 hpages closed 1 year ago
6
Mitigate non-backward comptible changes in matrixStats 1.0.0 [PR against RELEASE_3_17]

#32 hpages closed 1 year ago
12
'useNames = TRUE' is the new default in matrixStats v1.0.0

#31 const-ae closed 1 year ago
11
Error in MatrixGenerics while running Pando

#30 yojetsharma closed 1 year ago
1
Fix #28

#29 const-ae closed 2 years ago
3
Problem with the generic for 'rowLogSumExps()'

#28 rcastelo closed 2 years ago
7
Issue with matrixStats (>= 0.60.1)

#27 evanbiederstedt closed 2 years ago
2
Use formals() instead of args() in make_default_method_def() to address issue #25

#26 const-ae closed 3 years ago
8
Function only found on second attempt for sparse input

#25 const-ae closed 3 years ago
1
HEADS UP: New default for `ties.method` of {col,row}Ranks()

#24 HenrikBengtsson opened 3 years ago
0
Heads up: New `useNames` argument coming

#23 HenrikBengtsson closed 3 years ago
15
matrixStats: Next release will break MatrixGenerics 1.2.0 package tests

#22 HenrikBengtsson closed 3 years ago
18
CRAN instead of Bioconductor?

#21 HenrikBengtsson opened 3 years ago
8
Argument 'center' package tests

#20 HenrikBengtsson closed 3 years ago
4
Build Report Warning: File link 'rowRanges' in package 'SummarizedExperiment' does not exist

#19 const-ae closed 3 years ago
5
Remove scalar center arguments in test-api_compatibility

#18 const-ae closed 3 years ago
6
test-api_compatibility.R needs an update to accommodate an upcoming change in matrixStats

#17 hpages closed 3 years ago
2
Add default methods with user-friendly fallback mechanism

#16 hpages closed 3 years ago
10
Dispatch on methods for matrix objects when table objects are supplied

#15 hpages closed 3 years ago
10
Add drop and type to generic signature of [row|col]Quantiles

#14 const-ae closed 3 years ago
5
Implement useful fallback method for colVars()

#13 hpages closed 3 years ago
3
Fix remaining issues with missing links

#12 const-ae closed 4 years ago
2
Warnings on Tokay2 about Missing Links in the Documentation

#11 const-ae closed 4 years ago
6
Why ... for every default function?

#10 const-ae closed 4 years ago
2
Why are only some `ties.method` in `rowRanks()` supported?

#9 PeteHaitch opened 4 years ago
1
Review for Bioconductor submission

#8 PeteHaitch closed 4 years ago
0
BioConductor Submission

#7 const-ae closed 4 years ago
9
Implement remaining functions

#6 const-ae closed 4 years ago
2
Implement alternative generics for row/colMedians()

#5 const-ae closed 4 years ago
28
Generics for a sparseMatrixStats package?

#4 const-ae closed 3 years ago
26
Questions on use of setGenericImplicit()

#3 PeteHaitch opened 6 years ago
0
Where should these generics live?

#2 PeteHaitch opened 6 years ago
5
What is the contract for the return value of these generics?

#1 PeteHaitch opened 6 years ago
2