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To carry over from: https://github.com/ewels/MultiQC/issues/1005, just wanted to have this open to make the conversation 'cleaned up' in terms of requests.
As stated on the PR, @MikkelSchubert had …
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Hi there,
I am one of the developers of [nf-core/eager](https://nf-co.re/eager).
The current sex determination step of this aDNA focused genomics pipeline is very highly specific to humans, and …
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Hi!
I'm starting to use scikit allel, and I'll really enjoying it. However, there is a feature that I believe it's missing, and it is the possibility to extract the PCs from some of the samples and …
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I would like to start a discussion on the host sex term. As mentioned in slack
> We are currently working on a pig dataset with a lot of castrated entries. We are currently using the FAIR Data Sta…
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I just saw the preprint and KAGE looks like a promising alternative to GATK.
Would it be possible to use KAGE to genotype ancient DNA samples? The golden standard at the moment seems to be pileupC…
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Good afternoon Gabriel.
I have been experiencing some problems obtaining the contamination estimates.
I have mitogenomes from ancient human samples sequenced paired-end 2x75.
I have two cases with…
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Hi
I am trying to simulate aDNA data at high coverage. I assume the "-c" parameter sets the overall depth of coverage. Is this correct, or does it set the endogenous coverage? I do this:
./garga…
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> Adminisztracio szempontjabol nezve, mi a teendo azokkal a
jegyzokonyvekkel ahol a "Select for grading" menuben az van hogy
uploaded at : No
By Solymos Szilárd
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| | |
| ---- | ---- |
| **Label** | Preparation Type |
| **Definition** | A term used to classify or describe an object that indicates the actions that have been taken upon it and/or the processe…
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To talk about metagenomics integration into schema.
Field | Type | Options | Definition
-------|---------|----------- |--------------
`profiler` | `string` | | Can be any metagenomic profiler (i…