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Hi,
I don't undestrand why (hg39) chr4 39550356 39550356 T C
is annotated by annovar as chr4 39550356 39550356 T C ncRNA_intronic UGDH-AS1 …
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https://github.com/MelbourneGenomics/cpipe/blob/dev/docs/outputs.md
This document says annovar is deprecated. That caught me by surprise because annovar is still frequently found in many places in Cp…
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![image](https://user-images.githubusercontent.com/35955715/222949129-b2d48803-5a7e-4436-ad1f-59780cae0cbe.png)
Hello!
I've been trying to run InterVar but ANNOVAR seems to be failing. It shows …
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**Tool Details**
- Name of tool: annovar
- Tool homepage: http://annovar.openbioinformatics.org/en/latest/
- Tool description: ANNOVAR is an efficient software tool to utilize update-to-date inf…
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Hello, I would like to study the genetic correlations of several diseases in East Asians, and below is the log file. I am wondering why so many SNPs are being excluded due to valid alleles QC. Could y…
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I have used annovar to annotation my mutations,so when I use Interva, I add the --skip_annovar parameter.But it can't work normally.The error is below:
Warning: The InterVar seems not run correctly, …
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Hi,
Is the annovar server down at the moment? I can't seem to download anything, and even the check for a new version is failing
`
annotate_variation.pl -downdb -webfrom annovar refGene humandb…
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Hello,
I'm experiencing problems running VARI3 with my GWAS dataset, the following errors are:
```
127087 MB RAM detected; reserving 63543 MB for main workspace.
Allocated 47657 MB successful…
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I installed libsvm 3.32 and got this error with PredPSI-SVM
```
./main.sh example/sample.vcf -o example/outdir
>>== Check commands availablity ==>== Check commands availablity ==