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Hi,
When I run this command I'm getting type error because of this line y =pd.DataFrame(x[3].str.split(' ',1).tolist(),columns=['accession','description']), you can check the content of the files b…
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When I try to run
anvi-run-ncbi-cogs (COG20)
It has 'Config Error'
anvi-run-ncbi-cogs
usage: anvi-run-ncbi-cogs [-h] -c CONTIGS_DB [--cog-version COG_VERSION]
[--cog-dat…
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Hi all,
In brief, I am using `anvi-push` to push pangenomic data to `anviserver` and I get this error:
`Anvio Server Error: module 'anvio.dbops' has no attribute 'TablesForCollections'`
The p…
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## Short description of the problem
"ValueError: max() arg is an empty sequence" was encountered after running anvi-reaction-network.
## anvi'o version
Anvi'o ..................................…
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hello!
I’m trying to input my virsorter2 results into anvio and I’m having some issues with the conversion script.
Here’s the error I am getting:
`./convert2anvio.sh
######################## Rea…
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Hello MerenLab,
While at EBAME I was encouraged to open this discussion by @FlorianTrigodet and @ivagljiva, and bring it to @semiller10's attention.
DNA methylation is on the verge of constituti…
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A small project to improve anvi'o, based upon feedback/ideas @FlorianTrigodet and I heard from our colleagues at the QIB in Norwich.
## The need
We already have a great documentation system inte…
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Thanks for developing this great tool and make it available!
I was wondering if it is possible to use other methods of gene calling and annotation besides Anvio. Looking at the required input files…
juanu updated
4 months ago
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- [ ] bin
- [x] assemble
- [ ] function
- [ ] map
- [x] raw
- [ ] mash
- [ ] anvio
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Hi, I'm trying to download the viral-neighbors db from NCBI, but the download halts with this message. Could you help on that?
```
krakenuniq-download --db $DBDIR viral-neighbors --threads 10
Do…