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When I perform xCell online throug the website i have results like this:
| X1_11S_A | X1_20_A | X1_20_C | X1_22_A | X1_22_C | X1_25_A
-- | -- | -- | -- | -- | -- …
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Create C++ benchmark of reading operations as described in https://github.com/tristan0x/basalt/wiki/Use-Cases#use-cases to get baseline numbers.
Use Google Benchmark library to compute measurements.
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Dear developer,
I am working on a setup to model the Calcium dynamics of Astrocytes with Astro.
I am following the 'Ca2+ dynamics (Cluster)' instructions in 'Astro User guide v7'. I am trying to ru…
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I am looking to do some GO analysis on scRNA-seq data. We are validating an algorithm that produces interesting gene sets.
What is the best practice for constructing the background gene set? Should…
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Hi Cathrine,
First of all thanks for developing this very interesting method! I tried out CHOIR on one of my datasets to see how the results would compare with my previous clustering analysis. I un…
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Hello! I tried to use SC3 and this error occured:
```Error in validObject(x) : invalid class “SingleCellExperiment” object:
each element of 'reducedDims' must be a matrix-like object with nrow …
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Hello Mr. Leonid, I am following the guide file to plot something. and here is what I arrive:
![image](https://github.com/LeonidSavtchenko/BrainCellNew/assets/16096787/00afea51-5e56-4fc8-be22-f3af99a…
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Hi @aanderson54 @jloupe
Thanks for the great resource!
Brain TF bed file downloaded from https://www.synapse.org/Synapse:syn51942384.5/datasets/
DLPFC tissue TF ASH2L have 4 files,DLPFC-NEG m…
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(Ticket may not belong here)
We need a generic biblio details import extension for VFB pipeline2. This should use lookups via NCBI pubmed API or DOI to pull general bibliographic information into …
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Hi,
Bseq_Sc is a great tool. I like it!
However, there is a problem with fitEdgeR, if I want to perform analysis using five or more cell types, fitEdgeR return following error;
"Error in g…