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Thank you very much for sharing. I found that some data was not sorted during the reproduction process. How do you handle the sorting of these data such as BMMC data how to sort?Can you provide a tuto…
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@Kirans0615
Will update with BCOs as needed:
ATAC-seq BCO - https://biocomputeobject.org/builder?https://biocomputeobject.org/BCO_000495/DRAFT
GDC DNAseq (USes GTAK) - https://biocomputeobject.org/b…
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Hi,
I have some some bulk ATAC and RNA seq in which I wanted to identify some DORCs. Is it possible to use the dorc function in this kind os data (ie importing my bulk rds into the objects)? Of cour…
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Hi,
Thank you very much for developing the excellent SnapATAC2 tool!
I am working on integrating single-cell multiome data (ATAC + Gene Expression) from multiple samples and would like to comput…
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Hello, congratulations! Could you provide me with the processed ATAC data? I'm very interesting in your multi-omics single cell data. Thank you very much!
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### Discussed in https://github.com/stuart-lab/signac/discussions/1740
Originally posted by **methornton** July 9, 2024
Hello! I am processing some cancer cell line 10X plus Mulitome data an…
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I have 3 replicates of spatial RNA+ATAC multiomics data, can SpatialGlue integrate them together? Or I must cluster each slice individually?
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Hi @smorabit,
I would like to know if it is possible to use hdwgcna with single Cell ATAC coverage data instead of the SC RNA-seq expression matrix. How should the metacells function be handled? Wh…
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I am trying to train ChromBPNet on Arabidopsis ATAC-seq data, but run into the error `"Input file shifts inconsistent"` as in #153, #174 and #176. Having read through these other issues, I was able to…
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Hello,
I was wondering if TEpeaks would work for ATAC-seq peaks? Have you ever tried it?
Thank you
Rita
RRebo updated
3 months ago