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When I try to run the codes below:
`cellChat
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#### Summary:
When running the same stan model in parallel on a high number of datasets on multiple cores, using BiocParallel package with MulticoreParam back-end, I get an error message linked to sh…
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The package works by putting different input files into a list and processing them one at a time. This is very time-consuming if a user is processing cutaneous sqaumous cell carcninoma whole genome se…
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I have been trying to read in NIST MS/MS spectra using a function that looks like this:
`d spectraVariables(d)`
`
[1] "msLevel" "rtime" "acquisitionNum" …
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Hi !
is it possible to change the parallel package from Parallel to BiocParallel ?
Parallel RAM consumption is very high and BiocParallel don't copy data for each core
Thanks
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This is not ideal imo, means that warnings silently disappear. Would be fine (ish) if at least a message showed up saying we encountered some warnings
```r
library(BiocParallel)
fun [[1]]
#> [1…
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I recently experienced the following error running parallel code with `BiocParallel` on Travis:
```
Quitting from lines 189-194 (benchmarking.Rmd)
Error: processing vignette 'benchmarking.Rmd' f…
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Thanks in advance for taking care of this issue.
I got the error of "Error: BiocParallel errors
1 remote errors, element index: 3
1 unevaluated and other errors
first remote error: cannot …
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I use xcms3 usually via a Jupyter notebook interface using R 3.4.1. All components are installed with conda, from either conda-forge or bioconductor channels.
### Code and error message
On my lap…