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* humann nucleotide and protein database: https://github.com/galaxyproject/usegalaxy-tools/issues/855 (missing on AU/ORG)
* kraken2 - 5 toturials, multiple DBs - should all be updated to 2024 version…
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Dear Till,
I hope you are well and that I am not bothering you too much. I am working on DNA metabarcoding of the stomach contents of Atlantic bluefin tuna by amplifying partial fragments of the COI …
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This will build on #13 which handles the query FASTA file fragmentation, subject file BLAST database building, and actually running NCBI BLAST to compare the fragmented query to the subject database.
…
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Hi,
Thanks for the hard work on this tool.
I managed to hit a core dump when `amrfinder` runs `blastn` when running in multi-threaded mode.
Here are the logs:
```
(amrtest) root@8a9053f3c7c…
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Good day,
For MCScanX, is it Ok to use blast+ blast nucleotide (blastn) instead of blastall? I'm using bellow command :
blastn -query xxx.fasta -subject zzz.fasta -evalue 1e-10 -nu…
Rktf updated
4 months ago
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I want to open a discussion about **which information one should provide in the pull request**.
- Maybe having a copyable template with bullet-points addressing the annotation process would be help…
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I'm trying to run the blobtoolkit snakemake pipeline of and it seems like I'm getting an error each time trying to run the blastn step. I have followed the following to download the databases: https:/…
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blastn on nt is running out of memory with around 10k sequences and 24 GB available.
nt database:
```
$ du -sh /home/ubuntu/data/databases/ncbi/nt/20211125
163G /home/ubuntu/data/databases/…
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### Issue with `pip install apscale-blast`
Hey Till,
When I attempted to run the installation commands for **[apscale-blast 1.0.1](https://pypi.org/project/apscale-blast/1.0.1/)**, I encountered…
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Hi,
Can't we use diamond for nucleic acid searching similar to blastn?