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MCScanX
MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
http://chibba.pgml.uga.edu/mcscan2/
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Blast database
#76
Artifice120
opened
3 months ago
0
Warning during the installation and not gining out the results
#75
Shiva-brahmam03
opened
5 months ago
0
Issues during installation
#74
AlbertoBernacchi
opened
7 months ago
1
Where is MCScanX.zip ??
#73
tallnuttrbgv
closed
9 months ago
2
Blast+ blastn, No data in output file
#72
Rktf
opened
10 months ago
1
ask help for draw collinearity only one chromsomoe use mcscanx
#71
Jiangjiangzhang6
opened
11 months ago
0
Can not find source code to download
#70
jiangqiuqiuu
closed
1 year ago
1
Is it possible to generate collinearity file from 1 to 1 orthology tables?
#69
sheinasim
opened
1 year ago
0
Low number of collinear genes
#68
DustinSokolowski
opened
1 year ago
0
.tandem file was not created!
#67
sashulkaSh
closed
1 year ago
1
using java
#66
YingyingZ9
opened
1 year ago
0
Question
#65
AndyLy2Zy
opened
1 year ago
2
where can I find gtf_to_mcs.pl script
#64
LandiMi2
opened
1 year ago
0
Reading gff error: For input string: "2147774468"
#63
limengchen628
opened
1 year ago
2
Interpretation of Tandem files
#62
fafuyyk
opened
2 years ago
1
Does MCScanX support multi-threading?
#61
sunjiahe-hub
opened
2 years ago
0
Versioned release package for MCScanX
#60
jayramr
opened
2 years ago
1
Format of xyz.homology?
#59
scottcain
opened
2 years ago
3
detect_collinearity_within_gene_families.pl
#58
Lighter-k
opened
2 years ago
0
Website not charging to download
#57
mpalmada
opened
2 years ago
1
Use Github Actions as a CI for Linux x86_64 and aarch64
#56
martin-g
closed
2 years ago
2
[Question] Is Linux ARM64 a supported architecture?
#55
julien-faye
closed
8 months ago
1
Circle_plotter prints half circle with higher number of chromosomes
#54
jgnunes
opened
2 years ago
1
No result after run commands
#53
pcampiteli
opened
2 years ago
9
cannot open cds file
#52
ABDULLAHGUJJAR
opened
2 years ago
0
The problem with drawing with the JAVA MCscanX
#51
Wenwen012345
opened
2 years ago
2
Docker container and working example data
#50
chriswyatt1
opened
2 years ago
0
request for your help to understand the syntheny plot
#49
amit4mchiba
opened
2 years ago
1
Example DATA not working
#48
Dearbhaile
opened
2 years ago
2
Epoch
#47
anandksrao
opened
3 years ago
0
issus installing MCScanX
#46
alonziso
opened
3 years ago
0
Wrong bed like file
#45
zoomlion
opened
3 years ago
1
Restarting with -a option
#44
conJUSTover
opened
3 years ago
0
Question regarding blast
#43
Karimi-81
opened
3 years ago
0
blastall: command not found
#42
ankush290307
opened
3 years ago
1
Increase the default length of species ID (from gff/bed)
#41
zhaotao1987
opened
3 years ago
1
File format gff or bed and what format?
#40
Dearbhaile
opened
3 years ago
4
Mscanx Alignment e-value
#39
yuanning-li
opened
3 years ago
0
Newick format
#38
mictadlo
opened
3 years ago
0
limitation of species?
#37
Zhuxitong
opened
3 years ago
0
MCScanX_h
#36
lisiruiyu
opened
3 years ago
0
collinearity file does not have any collinear genes
#35
farhan-lab
opened
3 years ago
11
missing homologs
#34
Everybody888
opened
3 years ago
3
family_circle_plotter error: cannot find symbol
#33
ijeremy
closed
3 years ago
2
Cluster enabled version of MCScanX
#32
sanyalab
closed
2 years ago
1
help for old version of MCScanX for parameter U
#31
altingia
opened
4 years ago
0
Resolve getopt was not declared in this scope
#30
jdhayes
closed
4 years ago
0
Resolve 'chdir' was not declared in this scope
#29
jdhayes
closed
4 years ago
0
Resolve getopt was not declared in this scope
#28
jdhayes
closed
4 years ago
0
Question on missing homologous pairs in the .colinearity file
#27
Mandyzg
opened
4 years ago
2
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