-
Hello, I am trying to create a cell browser with a Seurat object. I converted the .Robj Seurat object to a .rds object and used the following command: cbImportSeurat -i project_7688.rds -o UCSC_Import…
-
For any given gene, variation, phenotype or disease page we have a ton of useful information, but this is split across tabs. Even clicking on the tabs is not always informative. Each on a gene page th…
-
First of all, thank you for this package. It is an essential tool for open science and a serious workhorse for us.
I am currently trying to generate a cellbrowser object from a seurat RDS. However …
-
ccore.ImageMaskContainer()
crashes, if the boolean parameters differ from:
(img1, img2, False, True, True)
-
We are setting up Cell Browser in our lab and have successfully prepared two Cell Browser folders as a test. However, when we use cbBuild to host the data, we can access the individual datasets only b…
-
First of all, thank you for this incredibly useful package. We get a lot of use out of it.
For large matrices (where `too.big = TRUE`), I've run into an issue where you can't force `--useMtx` to be…
-
Hi,
I wonder what configuration and object looked like for these objects? https://cells.ucsc.edu/?ds=multimodal-pbmc+sct
We have a gene expression + CITE-seq data for several objects, and we'd lik…
-
HI,
I have three data in my seurat object
object@assays$RNA@counts
object@assays$RNA@data
object@assays$RNA@scale.data
```
sceasy::convertFormat(object, from="seurat", to="anndata",
…
-
Hello, cell browser developers,
I had a query regarding the count matrix input. Does the cell browser allow using multiple count matrix data in the cellbrowser.conf file to use it for cbBuild opera…
-
Hello, I have been able to upload a handful of datasets to a project, and often times I will have to clear the cache for the new dataset to appear. However, I noticed that when I clear the cache with …