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i have 12 cell types i think this algorithm works with two cell types at a time
so for 12 cell types i have to run the 66 times
so please guide me in adding the loop while running
dir_in
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Hi Fabio,
Q: "what are cell types in chromatin accessibility similar to lung fibroblast in human".
It doesn't gives proper follow up question, so I couldn't specific what genes I want to use.
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Hi Vivian,
I'm trying to compare two celltypes. but reads are coming from multiple samples. do you suggest I extract the cells from each sample to a single bam file or multiple bam files?
to clarif…
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- [ ] Additional function parameters / changed functionality / changed defaults?
- [ ] New analysis tool: A simple analysis tool you have been using and are missing in `sc.tools`?
- [ ] New plotti…
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rss
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- Therefore downsampling is a weird hybrid, atm, and misleading.
```r
> scBarplot.CellFractions(fill.by = "Major_Celltypes", obj = combined.obj, group.by = "1", downsample = T)
The size of…
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I think the pattern matching is a bit unintuitive. Say I have raw and processed files in a directory and I want to simulate from either of them. Intuitively I would set pattern to e.g. `*_raw_counts.t…
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Hello,
Thank you for the great package!
I wanted to extract the manual labels with the function "GetFlowJoLabels" so that I can establish a comparison between manual and automated. Unfortunatel…
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I encountered the following issue while using plotcb.
![image](https://github.com/zktuong/ktplots/assets/140371949/bce2e085-713e-450a-964a-b56fc0772f40)
![image](https://github.com/zktuong/ktplo…
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Hi, I try to get predictions for my atlas using your notebook:
```
target_celltypes = ["B cell", "CD4 T cell", "DN T cell", "MAIT cell", "Myeloid cell", "NK cell", "Progenitor cell", "CD8 T cell",…