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Dear DiaNN developer,
I used the command line to run the DIANN, and I want to know if the DIANN can be used to detect the un-specific cutting, which means every kind of cleavage might exist.
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PeptideIndexer seems to have a problem matching peptides with enzyme specificity for chymotrypsin.
I have MS/MS data from samples that were digested with chymotrypsin. I searched that using Mascot an…
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From the Handbook:
https://www.ncbi.nlm.nih.gov/books/NBK53714/#gbankquickstart.i_have_viral_sequence_da
- [ ] CDS feature(s) with product name(s), nucleotide locations, and amino acid translation…
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Hi Vdemichev,
I am use DIANN 1.8.1 to quantify 2000 MS files, which already create .quant files. The RAM only have 256GB. When second search using newly created spectral library to reanalyse the da…
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Hello,
It looks like SELMA has built-in bias score matrices for DNaseI and Tn5, each called by the '-t DATATYPE' flag. Is it possible for the user to generate/use custom bias matrices for other enz…
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Right now, all metadata for a predicted peptide appears in the output FASTA ID. @keithchev suggested to dump everything other than the id and peptide index into the description field using space-separ…
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**Describe the question or problem**
Is there anything known about sensitivity issues for HCD / Asp-N workflows?
**Details**
Dear MSGF+ developers,
I am currently analysing a batch of samples,…
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For function _generatescExpMa_ , there is a param called **d**, which is not used in your function and with no related info. I think that would be type mistake.
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