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Hi,
I have been interested in using your pipeline with ONT long-read data with UMIs that are generated by colleagues in my lab.
To begin with, I tried to execute the pipeline with the example data…
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Hi,
I wonder if there is an appropriate way to estimate the usage of GEPs in another dataset so that one can compare changes in usage in different conditions? For example, I estimate GEPs usage per…
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Hi all,
I'll be working on producing a tutorial on the subject of **unsupervised ML/clustering packages**. The subtopics I have are as follows:
- PCA (+ scree)
- NMF
- Hierarchical clustering
-…
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Hello!
I'm trying to run stRainy on a collection of 14 related genomes to see if it will be useful to me in the future. i sequenced these 14 genomes independently and know what their genomes shoul…
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Hi @all: We have put one student analyzing the data to finish the project 🚀. We have made some major advances in the data analysis included in the following PR #55 in the results folder excel and figu…
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Hi,
Thank you for these detailed notebooks and workflow.
I managed to get to notebook 4 with my own dataset but in step 3 for MSMS clustering, when I try to run the line:
`spectra_clustering.…
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Many thanks for this fantastic tool. My questions are not really an issue but more theoretical.
- I presume if one does not have labels from the original datasets to be integrated, one could choos…
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There are several methods published that claim to find more stable cluster by evaluating different parameter combinations (aka consensus clustering). One example is [SC3S](https://github.com/hemberg-l…
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I keep getting an "Error in rule polish_clusters:" using the example data and configuration. Any ideas? The log for the job is shown below. Thanks!
Targets: EGFR_917
Building DAG of jobs...
Using…
belgn updated
3 years ago
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Hello,
I was following one of the tutorials for running cNMF on my own data set. My dataset has 78103 observations and on NAs or inf counts. To see if I could get the pipeline going I set the pa…