statisticalbiotechnology representative-spectra-benchmark issues

statisticalbiotechnology / representative-spectra-benchmark

Analysis of different consensus spectrum construction methods

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Read clustering results from various tools

#57 bittremieux closed 3 years ago
0
Discussion about results

#56 ypriverol opened 3 years ago
17
DevLong PR with results from data analysis.

#55 ypriverol closed 3 years ago
0
Export intermediate results to mzML

#54 bittremieux closed 4 years ago
0
Bugfixes + mzML IO placeholder

#53 bittremieux closed 4 years ago
0
Pending tasks

#52 ypriverol opened 4 years ago
1
Multiple evaluation options

#51 bittremieux closed 4 years ago
0
More IO through unified interface + benchmark improvements

#50 bittremieux closed 4 years ago
0
update pipeline to perform localization scores

#49 ypriverol closed 4 years ago
0
analyzis of an indenpendent mzIdentML with jupyter

#48 ypriverol closed 4 years ago
0
Minor changes in how the workflows can be run.

#47 ypriverol closed 4 years ago
0
Jupyter notebook created to analyse independent mzIdentML

#46 ypriverol closed 4 years ago
0
New version of OpenMS workflow for Identification MSGF+ + Percolator

#45 ypriverol closed 4 years ago
0
Identification workflow MSgf+ - Percolator

#44 ypriverol closed 4 years ago
0
Added the trypsin information

#43 ypriverol closed 4 years ago
0
Minor changes to describe the datasets parameters

#42 ypriverol closed 4 years ago
0
First workflow created for clustering results.

#41 ypriverol closed 4 years ago
0
correct typo

#40 enryH closed 4 years ago
0
add percolator

#39 timosachsenberg closed 4 years ago
0
Binning representative in unified interface

#38 bittremieux closed 4 years ago
0
Benchmark visualization

#37 levitsky closed 4 years ago
0
Ensuring same settings for analogous parameters of different methods for representative computation

#36 miantur opened 4 years ago
1
Simplify and unify IO and representative selection

#35 bittremieux closed 4 years ago
0
Add script for smart reverse fasta creation

#34 levitsky closed 4 years ago
0
Update clustering-based spectrum averaging script

#33 levitsky closed 4 years ago
0
Create most_similar_represenatatives_alternative.py

#32 miantur closed 4 years ago
0
added two participants

#31 enetz closed 4 years ago
0
Update of ms_io.py and benchmark.py to working draft with CLI arguments

#30 swillems closed 4 years ago
0
Add multithreading, code cleanup

#29 RalfG closed 4 years ago
0
Update literature.md

#28 miantur closed 4 years ago
0
Io benchmarking

#27 enryH closed 4 years ago
0
change the name of the repository.

#26 ypriverol closed 4 years ago
3
Update collaborators

#25 swillems closed 4 years ago
0
Add Moscow group to list of contributors

#24 levitsky closed 4 years ago
0
Wout contact

#23 bittremieux closed 4 years ago
0
Two new authors added

#22 ypriverol closed 4 years ago
0
Update README.md

#21 miantur closed 4 years ago
0
fix the email link

#20 ypriverol closed 4 years ago
0
Code cleanup

#19 RalfG closed 4 years ago
0
Optimized MGF creation

#18 bittremieux closed 4 years ago
0
We should move the id pipeline to nextflow or other type of workflow system

#17 ypriverol opened 4 years ago
0
Added the contributors to the main page.

#16 ypriverol closed 4 years ago
0
Update to most similar spectrum script

#15 enetz closed 4 years ago
0
inital commit of validation script using XTandem, Comet, MSGF+

#14 timosachsenberg closed 4 years ago
1
Add average spectrum generation using MS/MS-level clustering

#13 levitsky closed 4 years ago
0
Update of most similar spectrum script

#12 enetz closed 4 years ago
0
Add binning module (1B)

#11 RalfG closed 4 years ago
0
mzML support implemented for mracluster and maxquant

#10 ypriverol closed 4 years ago
0
Export cluster representatives to MGF

#9 bittremieux closed 4 years ago
0
Minor changes in the covert script

#8 ypriverol closed 4 years ago
0