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statisticalbiotechnology
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representative-spectra-benchmark
Analysis of different consensus spectrum construction methods
Apache License 2.0
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Read clustering results from various tools
#57
bittremieux
closed
3 years ago
0
Discussion about results
#56
ypriverol
opened
3 years ago
17
DevLong PR with results from data analysis.
#55
ypriverol
closed
3 years ago
0
Export intermediate results to mzML
#54
bittremieux
closed
4 years ago
0
Bugfixes + mzML IO placeholder
#53
bittremieux
closed
4 years ago
0
Pending tasks
#52
ypriverol
opened
4 years ago
1
Multiple evaluation options
#51
bittremieux
closed
4 years ago
0
More IO through unified interface + benchmark improvements
#50
bittremieux
closed
4 years ago
0
update pipeline to perform localization scores
#49
ypriverol
closed
4 years ago
0
analyzis of an indenpendent mzIdentML with jupyter
#48
ypriverol
closed
4 years ago
0
Minor changes in how the workflows can be run.
#47
ypriverol
closed
4 years ago
0
Jupyter notebook created to analyse independent mzIdentML
#46
ypriverol
closed
4 years ago
0
New version of OpenMS workflow for Identification MSGF+ + Percolator
#45
ypriverol
closed
4 years ago
0
Identification workflow MSgf+ - Percolator
#44
ypriverol
closed
4 years ago
0
Added the trypsin information
#43
ypriverol
closed
4 years ago
0
Minor changes to describe the datasets parameters
#42
ypriverol
closed
4 years ago
0
First workflow created for clustering results.
#41
ypriverol
closed
4 years ago
0
correct typo
#40
enryH
closed
4 years ago
0
add percolator
#39
timosachsenberg
closed
4 years ago
0
Binning representative in unified interface
#38
bittremieux
closed
4 years ago
0
Benchmark visualization
#37
levitsky
closed
4 years ago
0
Ensuring same settings for analogous parameters of different methods for representative computation
#36
miantur
opened
4 years ago
1
Simplify and unify IO and representative selection
#35
bittremieux
closed
4 years ago
0
Add script for smart reverse fasta creation
#34
levitsky
closed
4 years ago
0
Update clustering-based spectrum averaging script
#33
levitsky
closed
4 years ago
0
Create most_similar_represenatatives_alternative.py
#32
miantur
closed
4 years ago
0
added two participants
#31
enetz
closed
4 years ago
0
Update of ms_io.py and benchmark.py to working draft with CLI arguments
#30
swillems
closed
4 years ago
0
Add multithreading, code cleanup
#29
RalfG
closed
4 years ago
0
Update literature.md
#28
miantur
closed
4 years ago
0
Io benchmarking
#27
enryH
closed
4 years ago
0
change the name of the repository.
#26
ypriverol
closed
4 years ago
3
Update collaborators
#25
swillems
closed
4 years ago
0
Add Moscow group to list of contributors
#24
levitsky
closed
4 years ago
0
Wout contact
#23
bittremieux
closed
4 years ago
0
Two new authors added
#22
ypriverol
closed
4 years ago
0
Update README.md
#21
miantur
closed
4 years ago
0
fix the email link
#20
ypriverol
closed
4 years ago
0
Code cleanup
#19
RalfG
closed
4 years ago
0
Optimized MGF creation
#18
bittremieux
closed
4 years ago
0
We should move the id pipeline to nextflow or other type of workflow system
#17
ypriverol
opened
4 years ago
0
Added the contributors to the main page.
#16
ypriverol
closed
4 years ago
0
Update to most similar spectrum script
#15
enetz
closed
4 years ago
0
inital commit of validation script using XTandem, Comet, MSGF+
#14
timosachsenberg
closed
4 years ago
1
Add average spectrum generation using MS/MS-level clustering
#13
levitsky
closed
4 years ago
0
Update of most similar spectrum script
#12
enetz
closed
4 years ago
0
Add binning module (1B)
#11
RalfG
closed
4 years ago
0
mzML support implemented for mracluster and maxquant
#10
ypriverol
closed
4 years ago
0
Export cluster representatives to MGF
#9
bittremieux
closed
4 years ago
0
Minor changes in the covert script
#8
ypriverol
closed
4 years ago
0
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