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### Project short name: inflammationInducedCancerImmunotherapy
### Primary Wrangler:
Ida
### Secondary Wrangler:
Arsenios
### Associated files
* Google Drive: [folder](https://dr…
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Dear @colbyford, and @abschneider,
Could you please help me out:
Best,
Liam
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To implement the Smart ID mapper feature from Raja we need to retrieve the crossreferences for all UniProt Accessions not only for the proteins we have in GlyGen. EBI needs to integrate this in their …
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Input of definitions and list of values can be found:
https://github.com/pha4ge/Wastewater_Contextual_Data_Specification/tree/main/Template
The following table combines the info from above and add…
edsu7 updated
2 months ago
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"chr_id","chr_start_pos","chr_end_pos","ref_nt","alt_nt","ensembl_transcript_id","ensembl_peptide_id","uniprotkb_canonical_ac","refseq_ac","uniprotkb_aa_pos","refseq_aa_pos","ref_aa","alt_aa"
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### Description of feature
As discussed in #170 I'm suggesting to get rid of `--ncbi_assembly_metadata` requirement and obtain relevant assemblies directly based on assembly IDs.
Below I provide …
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**User story**
As LeGo, we would like the new study set up fields to be added to the MLWH, so that we can pull the data into eDAM and create DAA’s from it.
Currently, a script from eDAM pulls in t…
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I only did a very quick and sparse spot check and found a lot of issues with the oncomx data. This dataset is going to need a thorough check row by row because I found multiple issues.
Multiple iss…
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Adding this as an issue in case anyone has a similar problem.
`MGnifyR::get_download_urls()` doesn't return links for the read data (fastq) used to generate assemblies/analyses, but this may be use…
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**Describe the bug**
When there is an accession format with no fields defined and then you go to an accession querycombobox and click search it returns different results from the querycombobox itself…