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nf-core
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bacass
Simple bacterial assembly and annotation pipeline
https://nf-co.re/bacass
MIT License
63
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FASTP module not finding input paths
#187
hazlemhub
opened
2 days ago
0
Bump version 2.5.0dev
#186
Daniel-VM
closed
2 days ago
1
MultiQC Input File Name Collision
#185
rvijay-seqcoast
opened
3 days ago
0
Code review for release 2.4.0
#184
Daniel-VM
closed
6 days ago
1
Fix dfast conda issue by updating version
#183
Daniel-VM
closed
2 weeks ago
2
uncomment required line for linting in `--release` mode
#182
Daniel-VM
closed
2 weeks ago
1
Release 2.4.0
#181
Daniel-VM
closed
6 days ago
2
Bump version 2.4.0
#180
Daniel-VM
closed
2 weeks ago
4
fixed matrix.test_name in linting and missing features from template 3.0.2
#179
Daniel-VM
closed
2 weeks ago
3
Fix bakta running only for one sample
#178
Daniel-VM
closed
1 month ago
4
Update Unicycler to 0.5.1
#177
leppd
opened
1 month ago
1
Nf core template merge 3.0.2
#176
Daniel-VM
closed
1 month ago
2
Important! Template update for nf-core/tools v3.0.2
#175
nf-core-bot
closed
1 month ago
0
Important! Template update for nf-core/tools v3.0.1
#174
nf-core-bot
closed
1 month ago
1
Important! Template update for nf-core/tools v3.0.0
#173
nf-core-bot
closed
1 month ago
1
remove the need for `ncbi_assembly_metadata`
#172
SchwarzMarek
opened
1 month ago
1
Bakta running only for one sample
#171
SchwarzMarek
closed
1 month ago
5
kmerfinder update and optimization
#170
SchwarzMarek
closed
1 month ago
7
Fix long reads polishing input channel and refactor long reads polishing section
#169
Daniel-VM
closed
1 month ago
2
Fix wrong metadata in canu input channel
#168
Daniel-VM
closed
2 months ago
1
Remove `params.save_merged` as merged reads are not used in downstream analysis
#167
Daniel-VM
closed
2 months ago
1
Multiqc after trimming QC section
#166
Daniel-VM
closed
2 months ago
1
Error when ONT only + dragonflye + nanopolish
#165
SchwarzMarek
closed
1 month ago
1
bacass does not run canu assebler when requested
#164
SchwarzMarek
closed
2 months ago
3
Fix `params.save_merged` to properly save merged files
#163
Daniel-VM
closed
2 months ago
1
MultiQC doesn't include FastQC reports for trimmed reads
#162
santiagorevale
closed
2 months ago
5
save_merged discards the merged reads
#161
santiagorevale
closed
2 months ago
6
Fix memory issues, handle KmerFinder results, and manage empty fasta files
#160
Daniel-VM
closed
2 months ago
1
Update module Kmerfinder
#159
Daniel-VM
closed
2 months ago
1
Added module to concatenate/merge fastq files
#158
Daniel-VM
closed
1 month ago
2
Fixed current Zenodo URL of Kmerfinderdb
#157
Daniel-VM
closed
2 months ago
2
Support of concatenation of multiple fastq files form the same sample
#156
Daniel-VM
closed
1 month ago
0
download_reference.py script can't find the top reference
#155
sralchemab
closed
2 months ago
10
Fix kmerfinder scripts
#154
Daniel-VM
closed
2 months ago
1
Fixed `files_unchanged` section in `.nf-core.yml` to allow a proper linting test.
#153
Daniel-VM
closed
4 months ago
1
Fix missing 'dev' tag in bumped version
#152
Daniel-VM
closed
4 months ago
5
Feature request: allow directory paths for LongFastQ input
#151
watsonar
opened
4 months ago
2
Replace local unicycler module with nf-core module + bump version
#150
FloWuenne
closed
4 months ago
5
Patch release v2.3.1
#149
Daniel-VM
closed
5 months ago
2
Bump version 2.3.1
#148
Daniel-VM
closed
5 months ago
1
fix input file not a valid path
#147
Daniel-VM
closed
5 months ago
2
bump version 2.3.1dev
#146
Daniel-VM
closed
5 months ago
3
Update local/unicycler to nf-core/unicycler to Avoid Potential Versioning Issues
#145
Daniel-VM
closed
4 months ago
0
Chack whether `--assembly_type` parameter is requiered in nextflow run and update `README.md`
#144
Daniel-VM
opened
5 months ago
0
Migration from nf-validation to nf-schema
#143
Daniel-VM
opened
5 months ago
0
MultiQC Version 1.21 Parsing Issue
#142
Daniel-VM
opened
5 months ago
0
Update date of release in CHANGELOG.md
#141
Daniel-VM
closed
5 months ago
2
Added missing license in `kmerfinder_summary.py`
#140
Daniel-VM
closed
5 months ago
1
Reviewer 2 suggestions before v2.3.0 release
#139
Daniel-VM
closed
5 months ago
2
implementation of reviewer suggestions before v2.3.0 release
#138
Daniel-VM
closed
6 months ago
1
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