nf-core bacass issues - Githubissues

nf-core / bacass

Simple bacterial assembly and annotation pipeline

https://nf-co.re/bacass

MIT License

60 stars 41 forks source link

issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

remove the need for `ncbi_assembly_metadata`

#172 SchwarzMarek opened 20 hours ago
0
Bakta running only for one sample

#171 SchwarzMarek opened 1 day ago
0
kmerfinder update and optimization

#170 SchwarzMarek closed 20 hours ago
7
Fix long reads polishing input channel and refactor long reads polishing section

#169 Daniel-VM closed 4 days ago
2
Fix wrong metadata in canu input channel

#168 Daniel-VM closed 2 weeks ago
1
Remove `params.save_merged` as merged reads are not used in downstream analysis

#167 Daniel-VM closed 2 weeks ago
1
Multiqc after trimming QC section

#166 Daniel-VM closed 2 weeks ago
1
Error when ONT only + dragonflye + nanopolish

#165 SchwarzMarek closed 1 day ago
1
bacass does not run canu assebler when requested

#164 SchwarzMarek closed 2 weeks ago
3
Fix `params.save_merged` to properly save merged files

#163 Daniel-VM closed 3 weeks ago
1
MultiQC doesn't include FastQC reports for trimmed reads

#162 santiagorevale closed 2 weeks ago
5
save_merged discards the merged reads

#161 santiagorevale closed 2 weeks ago
6
Fix memory issues, handle KmerFinder results, and manage empty fasta files

#160 Daniel-VM closed 4 weeks ago
1
Update module Kmerfinder

#159 Daniel-VM closed 1 month ago
1
Added module to concatenate/merge fastq files

#158 Daniel-VM opened 1 month ago
2
Fixed current Zenodo URL of Kmerfinderdb

#157 Daniel-VM closed 1 month ago
2
Support of concatenation of multiple fastq files form the same sample

#156 Daniel-VM opened 1 month ago
0
download_reference.py script can't find the top reference

#155 sralchemab closed 4 weeks ago
10
Fix kmerfinder scripts

#154 Daniel-VM closed 1 month ago
1
Fixed `files_unchanged` section in `.nf-core.yml` to allow a proper linting test.

#153 Daniel-VM closed 2 months ago
1
Fix missing 'dev' tag in bumped version

#152 Daniel-VM closed 2 months ago
5
Feature request: allow directory paths for LongFastQ input

#151 watsonar opened 2 months ago
2
Replace local unicycler module with nf-core module + bump version

#150 FloWuenne closed 3 months ago
5
Patch release v2.3.1

#149 Daniel-VM closed 3 months ago
2
Bump version 2.3.1

#148 Daniel-VM closed 3 months ago
1
fix input file not a valid path

#147 Daniel-VM closed 3 months ago
2
bump version 2.3.1dev

#146 Daniel-VM closed 3 months ago
3
Update local/unicycler to nf-core/unicycler to Avoid Potential Versioning Issues

#145 Daniel-VM closed 3 months ago
0
Chack whether `--assembly_type` parameter is requiered in nextflow run and update `README.md`

#144 Daniel-VM opened 3 months ago
0
Migration from nf-validation to nf-schema

#143 Daniel-VM opened 3 months ago
0
MultiQC Version 1.21 Parsing Issue

#142 Daniel-VM opened 3 months ago
0
Update date of release in CHANGELOG.md

#141 Daniel-VM closed 3 months ago
2
Added missing license in `kmerfinder_summary.py`

#140 Daniel-VM closed 3 months ago
1
Reviewer 2 suggestions before v2.3.0 release

#139 Daniel-VM closed 4 months ago
2
implementation of reviewer suggestions before v2.3.0 release

#138 Daniel-VM closed 4 months ago
1
Release 2.3.0

#137 Daniel-VM closed 3 months ago
4
bump version 2.3.0

#136 Daniel-VM closed 4 months ago
2
Implementation of KmerFinder subworkflow Custom Quast, and Custom MultiQC Reports

#135 Daniel-VM closed 4 months ago
2
fix samples reported of prokka/bakta in multiqc report

#134 Daniel-VM closed 4 months ago
3
Template update nf-core tools v2.14.1

#133 Daniel-VM closed 4 months ago
1
Prokka and Bakta are reporting single log in multiqc report when running multiple samples

#132 Daniel-VM closed 4 months ago
0
Important! Template update for nf-core/tools v2.14.1

#131 nf-core-bot closed 4 months ago
0
Important! Template update for nf-core/tools v2.14.0

#130 nf-core-bot closed 4 months ago
1
Running error of exit status 255

#129 aslangabriel99 closed 4 months ago
1
Save trimmed parameter saying 'false' is not a valid choice

#128 rvijay-seqcoast closed 5 months ago
2
Fix warning messages on process name

#127 Daniel-VM opened 5 months ago
0
bump version 2.3.0dev

#126 Daniel-VM closed 5 months ago
3
Fix: save_trimmed_fail is a boolean

#125 adamrtalbot closed 5 months ago
6
add reviewer suggestions in PR #122

#124 Daniel-VM closed 6 months ago
1
fix Download Pipeline Workflow

#123 Daniel-VM closed 6 months ago
2