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(copied from https://github.com/sourmash-bio/sourmash/issues/461#issuecomment-1993390314)
Hi Titus @ctb , I don't know whether I could ask the following questions related to this issue, anyway....
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Dear Author,
I am currently using your R package for analyzing paired microbial sample data, where each pair consists of two samples from the same patient. I noticed that the `trans_diff` function …
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Hello @mblue9 I write here the things that need to be done for any of the packages in the tidytranscriptomics ecosystem. Feel free to add points (in general feel free to do anything, all the repositor…
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Hello,
I have some general issue questions, so I apologize if this is page is meant more for specific technical issues.
I have run ConQuR and everything worked well and the batch effect was mod…
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Hello,
I am trying to analyze the humann output files to obtain the differentially abundant pathways in each group using aldex2_kw.
however I got this error
Error in aldex.clr.function(reads, con…
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Dear Vadim
In the diann results, most of the Protein.ids are uniprot accession ids (from the fasta file I used), but some are accession ids combined by ";" . Some are combined with cRAP-***, I thin…
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Library phyoloseq Data= Globalpatterns
` GP = filter_taxa(GlobalPatterns, function(x) sum(x > 3) > (0.2*length(x)), TRUE)`
Define a human versus non-human categorical variable, and add this new vari…
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Could you please point me to github repos or links where you have successfully tested pathway analysis (GSEA and Overrepresenation analysis) tidybulk functions for pathway analysis? Some of the worksh…
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What could be the meaning of this error. May metadata file seems to be okay but this is the result I get when I run the ggpicrust() func.