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Hello @EricKutschera,
is there a way to do this `classify_isoform_differences.py` for all isoforms? not doing individually for each isoform so that I have at the end all isoform in a single tsv fi…
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I am running make_hicexp() on my data for 14 chromosomes. My spares matrices seem to be fine for each chromosome. Somehow the hicexp@hic_table is empty for last two chromosomes, but it doesn't give me…
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Hello, developer!
I have been using the Methykit package for analyzing differential methylation, and I want to express my gratitude for developing such a helpful tool for methylation research. Howe…
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https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4671649/
Background
The schistosome esophagus is divided into anterior and posterior compartments, each surrounded by a dense cluster of gland cell…
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Dear Milan -
Thank you for Dsuite, a very useful tool! I recently got a result with signficant clustering by the KS-homoplasy test but non-significant D-statistic. Is this expected? The bioRxiv pre…
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Historical (up to 2020):
- baseline screening with cytology age age 35
- bivalent vaccination at 86% coverage
Intervention scenarios:
- run out to 2120 to take a look, but most likely will cut a…
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Hello,
I am doing a tutorial and getting errors below. I haven't change anything, just followed the tutorial. Can I get a reason why I am getting these errors?
> differential.expression.statist…
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May i ask 1 question:
if data is already pseudobulk object from scRNAseq data with logCPM value, how can i change it back to a seurat object with counts value? Can i still use above method to turn …
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Hotfix build with some improvements to the fuel experience and some physics perf improvements.
Improvements
- A new fuel tank format is introduced, with a more conventional sizing
- Bounds will s…
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May i ask 1 question:
if data is already pseudobulk object from scRNAseq data with logCPM value, how can i change it back to a seurat object with counts value? Can i still use above method to turn …