asmagen robustSingleCell issues

asmagen / robustSingleCell

Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.

http://dx.doi.org/10.1016/j.celrep.2019.10.131

MIT License

13 stars 2 forks source link

issues

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Getting errors from the tutorial.

#37 ssun12 opened 3 years ago
2
Error in read.preclustered.datasets(pooled_env) : Feature genes mismatch - need to correct dataset binding matching

#36 zhaoliyang0429 opened 3 years ago
2
is there any way to convert expression data matrix to a robustSingleCell object for analysis?

#35 yulijia opened 3 years ago
0
Do not import all of `GGally`

#34 schloerke closed 4 years ago
1
Issue 12

#33 asmagen closed 4 years ago
0
Issue 1211

#32 asmagen closed 4 years ago
0
load.cluster.names not exported

#31 asmagen opened 5 years ago
0
Issue with read.data

#30 asmagen opened 5 years ago
4
Pdf canvas size is not adjusted properly

#29 asmagen opened 5 years ago
0
Create LICENSE

#28 asmagen closed 5 years ago
0
Filter data issue

#27 asmagen opened 5 years ago
0
Outputs to user interface

#26 asmagen opened 5 years ago
0
Figure margins errors

#25 asmagen opened 5 years ago
0
PCA gene signature activation regress functionality bug

#24 asmagen closed 5 years ago
0
read.preclustered.datasets: bug with the experiments variable

#23 asmagen closed 5 years ago
1
cluster.analysis output missing

#22 asmagen closed 5 years ago
0
Rerunning read.precluster.data changed attribute size

#21 Mamie closed 5 years ago
0
Waiting for tSNE slurm output in summarize

#20 asmagen closed 5 years ago
1
union.genes.filter call in read.preclustered.datasets

#19 asmagen closed 5 years ago
1
margins are hard coded in visualize.cluster.cors.heatmaps

#18 asmagen closed 5 years ago
4
check_not_slurm is called unnecessarily in function that don't use rslurm

#16 asmagen closed 5 years ago
3
Bug in read.preclustered.datasets

#15 asmagen closed 5 years ago
1
compare.cluster.similarity undefined

#14 asmagen closed 5 years ago
3
run_tSNE fails on big datasets

#13 asmagen closed 5 years ago
3
plot.simple.heatmap not exported

#12 asmagen closed 5 years ago
3
Printing to console (e.g. print, str) stops working after running ribosomal.score(LCMV1)

#11 nrachman closed 5 years ago
3
filter.cluster.data/filter.data functions not exported

#10 asmagen closed 5 years ago
1
check rslurm function prints 'SLURM not detected' even when slum is detected

#9 asmagen closed 5 years ago
3
Clean up open file connection after function throw an error

#8 Mamie closed 5 years ago
1
Failing to read data after changing input parameter

#7 asmagen closed 5 years ago
1
Revert "Added new figures to lcmv.rmd and revised the figure name annotations"

#6 asmagen closed 5 years ago
0
Added new figures to lcmv.rmd and revised the figure name annotations

#5 asmagen closed 5 years ago
0
Create LICENSE

#4 asmagen closed 5 years ago
0
Add marker visualizations

#3 asmagen closed 5 years ago
2
GitHub.io

#2 asmagen closed 5 years ago
1
Add marker discovery functionality as described in original publication.

#1 asmagen closed 5 years ago
2