issues
search
millanek
/
Dsuite
Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
159
stars
26
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
To install Dsuite, I downloaded Git and trying to install from here, but the problem is, it is not recognizing "make"
#102
huma-cloud
opened
3 weeks ago
0
Forcing particular combinations
#101
elizeng
closed
1 month ago
1
Getting nan when using Fbranch
#100
dylanHco
opened
1 month ago
0
Error plotting Fbranch: ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (44,) + inhomogeneous part.
#99
NRuizVargas
opened
1 month ago
1
Dsuite Dinvestigate -w 50,25 $IN_vcf $Pop_list $trios_list
#98
heyugang
opened
2 months ago
0
Empty file of local genomic windows of fd after Dinvestigate
#97
pierrebarry
opened
3 months ago
0
Could Dinvestigate (fd, fdM, and df) identify the direction of gene introgression?
#96
maruiqi0710
opened
4 months ago
0
Add missing <iterator> header for newer `gcc` compilers
#95
Fan-iX
opened
5 months ago
0
--abbaclustering with DtriosParallel
#94
RSchley
opened
5 months ago
1
compatible VCF format with pool sequencing data option
#93
Spork0527
closed
5 months ago
2
Compilation error
#92
fdecarpentier
opened
6 months ago
1
Cannot get Dinvestigate to run
#91
drew-olson-tmru
closed
5 months ago
2
Dinvestigate issue: D.cpp:80: void doAbbaBaba(): Assertion `threePops.size() == 3' failed
#90
drew-olson-tmru
closed
5 months ago
2
Question about Dsuite Dinvestigate
#89
klcym
closed
7 months ago
3
Dinvestigate error with vcf. Not sure why
#88
drew-olson-tmru
closed
7 months ago
0
non-significant D-statistic with significant clustering (homoplasy test)
#87
svedwards
opened
8 months ago
2
Fbrach error: The tree string could not be parsed correctly!
#86
tsm-tsm
opened
8 months ago
0
When I finished running Dquartets, the output file was blank.
#85
wuyh0328
opened
8 months ago
5
Only plot fbranch results with Z>=3
#84
jiangzy26
opened
9 months ago
1
Question about order of population set when running Dtrios
#83
hungweichen0327
opened
9 months ago
1
The sample is in the VCF but not assigned in the SETS.txt
#82
ScooLida
opened
10 months ago
8
Out of Range error: map::at
#81
Shuaileisy
opened
10 months ago
1
Mixed ploidy within populations
#80
elsemikk
opened
10 months ago
2
make a release or tag versions ?
#79
arielzn
opened
11 months ago
0
Dquartets Output error in Dsuite
#78
ashnareyaz
opened
1 year ago
6
Dtrios error: Assertion `p_S3a >= 0' failed
#77
Andrew-N-Black
opened
1 year ago
0
Do I need to run LD Prune before running Dsuite?
#76
maruiqi0710
opened
1 year ago
0
Different results obtained when using Dtrios and DParallel on the same vcf file
#75
ashnareyaz
opened
1 year ago
0
Dsuite for triploids
#74
sstwins21
closed
1 year ago
0
output file：There is no result in the output file, it is blank
#73
yangwukaidi
opened
1 year ago
4
Dtrios Assertion `p_S1a >= 0' failed
#72
jamesfifer
opened
1 year ago
0
can´t recognize a sample in a tree and recognize more four groups when I assigned three
#71
almamelisa
opened
1 year ago
1
Question about the "-i INFO/DP", the different values get different results
#70
CrawlingSponge
opened
1 year ago
0
about chromosome painting
#69
cyadrogarcia
opened
1 year ago
0
DtriosParallel on hpc slurm
#68
atongsa
opened
1 year ago
0
Dtrios error in calculating f4-ratio when using genotype probabilities, but not with genotype calls
#67
zjnolen
closed
1 year ago
6
use Dquartets still need 'Outgroup'
#66
yangfty
closed
1 year ago
1
About significance
#65
jiangzy26
closed
1 year ago
0
Dsuite Dtrios creates no output files when --out-prefix points to a non-existing directory
#64
feilchenfeldt
closed
1 year ago
1
How to explain the results of 'Ancestry painting'.
#63
Galaxy-228
opened
1 year ago
0
Mixed sample size
#62
Jolvii85
closed
1 year ago
2
Make error during installation
#61
ClaudiaPaetzold
closed
1 year ago
1
How deal with output of Dinvestigate
#60
RezaFahi
opened
1 year ago
5
Three questions about the interpretation of Dsuite results
#59
RezaFahi
closed
1 year ago
2
Dtrios do not calculate D and f-ratio for all possible trios
#58
RezaFahi
closed
1 year ago
5
How do I download example files
#57
m-rq
closed
1 year ago
1
Patterson is misspelled in the "About" section.
#56
mmatschiner
closed
1 year ago
0
no p-values calculated for any trios after recent update
#55
jmgorospe
opened
2 years ago
1
cannot plot fbranch statistics
#54
bnsacks
opened
2 years ago
11
ABBA pattern more than the BBAA pattern
#53
zhangzhiyangcs
opened
2 years ago
0
Next