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Include an rmd template where you would get richness and diversity measures some plots a list of species maybe add later a possibility for map
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1. Semantic diversity (semD)
- A measure of the distance between various contexts in which a word appears. Low diversity values indicate that a word is used in very narrow contexts (e.g. spinach), wh…
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I know this issue has come up a bunch (e.g., here: https://github.com/joey711/phyloseq/issues/1018 and https://github.com/joey711/phyloseq/issues/552 - but I noticed its closed but with many people as…
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Hey everyone,
I'm trying to write an if else loop (as below) and I keep coming up with the error
$ operator is invalid for atomic vectors
Even when I try to have the item as a list or dataframe…
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This is a rather specific idea, but one that, as far as I know, is not well implemented in R. Effective population size (Ne) gives an estimate of the number of individuals that contribute alleles into…
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General:
> Add a load data function to load data (you don't say) from phyloseq, BIOM tables and .csv files.
> Make any and all graphics interactive, if and when possible. Which is almost always.
…
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External light-dark cycle shapes gut microbiota through intrinsically photosensitive retinal ganglion cells - Lee _et al_ - EMBO Rep
https://www.embopress.org/doi/full/10.15252/embr.202052316
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Reduced form analysis of the intervention for the following outcomes:
1. Engagement with the choice system: Did treated students apply?
2. Engagement with the choice system: What kinds of schools di…
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Hi, thanks for providing the software.
I have multiple samples and have run TRUST on each of them, but the sequencing depths are different between samples, do you think there is a suitable solution …