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Several instances of invalid bvals and bvec files (all values = 0) were incorporated into the pipeline. Wasn't apparent that something was wrong until an "index out of range" error occurred during edd…
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i completely think dmriprep should focus on "standard" brain scans to start with. but will it be written in a way to allow for possible modification to cover other brain regions scanned with diffusio…
satra updated
5 years ago
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I'm trying to use the viewer by uploading a folder containing the dwiqc.json files of several subjects (outputs of QSIPrep). However, the loading seems to be stuck, it's constantly in the "Loading..."…
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I've been doing more tractography lately and was getting really bad tract segmentation on a particular group of scans acquired on a Siemens Prisma. After talking to Yogeth Rathi's group and @mattciesl…
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@oesteban @feilong @mgxd @HippocampusGirl Here is a single-shot resampler that accepts an original BOLD series and an fMRIPrep output directory.
Parts of this are cut-and-pasted from various places…
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It will be a path to the html file that has visualizations for the scan
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We discussed using [fiberfox](https://docs.mitk.org/2016.11/org_mitk_views_fiberfoxview.html) and also [fiberfox-wrapper](https://github.com/PennBBL/fiberfox-wrapper) to create datasets with known art…
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Hi Matt,
Some thoughts on and questions regarding the QC evaluation of qsiprep processed data.
I was wondering if the carpetplot provided by qsiprep could be updated to the color scheme/format as …
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The inputs to `antsRegistration` when finding the misalignment between the fieldmap reference and the target DWI (via its *b=0* reference) is currently unacceptable for our dataset ds001771.
This p…
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FMRIPrep version 20.1.0
Not sure if that is in fMRIPrep or SDCFlows that the workflow name is set, but I get the following error if B0FieldIdentifier contains a `-` , and this will likely occur for o…