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I wonder if it is possible to make results reproducible using abricate.
Different results were sometimes produced when the same command was run several times.
```
abricate --threads 80 --db megar…
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TBProfiler generates a resistance report that lists each drug on a separate row. This makes it a bit difficult to gather together resistance info from multiple samples. It would be convenient to have …
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How would it be possible to have a summary made out of a chunk? With a prompt named: `summary_gen.yaml`
**_EDIT: While I had trouble getting my head around the code in `./original`, I started from …
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Hi!
As far as I am concerned, tb-profiler database contains all the mutations that confer drug resistance listed in the WHO catalogue.
However, the following mutation is not found in the tbdb https:…
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On drug regimen page (specific to each repurposed drug where we ask dose, duration, etc.), add a field for what action was taken with the drug (High)
1. Drop-down options:
a. Completed or Continued
…
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Documenting notes here that I previously transcribed
* Cloning procedure was clarified in #45
* Next steps computationally
* Look at features that differentiate resistant and wild-type
* …
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First of all, thank you for sharing the code!
I tried to follow the setup steps. However, the knowledge base resource files are required. I tried to collect the files for COSMIC. The configuration fi…
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- [x] Neisseria gonorrhea
- [x] Bordetella hinzi
- [x] Bordetella avium
- [x] Mycobacterium tuberculosis
- [x] Salmonella Typhi
- [x] Mycoplasma genitalium
- [x] Pseudomonas aeruginosa
- [x] Ra…
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Do QA work on the P. falciparum drug resistance analysis (a.k.a. guidebook) part of the site.
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@mekelley and @ayberman are getting ready to ramp up data collection. Specifically, we will collect Cell Painting data from 7 resistant clones and a wildtype parental line undergoing two drug treatmen…