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Hello!
I'm trying to make a test of this tool with a small dataset, but I got a message of 'Segmentation fault' and I don't know what's going, could you help me to solve it?
./orthorefine.exe --in…
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Hi,
I'm trying out this tool with a simple setup of a few bacterial genomes which I have aligned (progressively, i.e. not ava) w/minimap2 with the proper flags. I cat'ed the PAFs together (for A vs…
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Brodylab has updated to Matlab2019b, Marino has updated to Matlab2022a.
From Chuck:
"As for the update you may still see a bunch of errors going to 2019b. At the time when we did that update it w…
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Hello, I am trying to create a model of Macaca Mulatta (mmul) using MetaDraft. I have the `.faa` file for mmul, along with a Homo Sapien `.gbff` file and an SBML file (Recon3D from the BiGG database).…
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```
iss generate --draft GCF_000196335.1_ASM19633v1_genomic.fna -o GCF_000196335.1 --cpus 6 --model novaseq --coverage_file coverage.txt
INFO:iss.app:Starting iss generate
INFO:iss.generator:Usi…
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I get the following error when building kraken2 database:
`rsync: link_stat "/all/GCF/037/914/965/GCF_037914965.1_ASM3791496v1/GCF_037914965.1_ASM3791496v1_genomic.fna.gz" (in genomes) failed: No suc…
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Hello,
I am using Kraken2 v2.1.2. When trying to download library `./kraken2-build --download-library viral --db viral_db` I get the following error.
> rsync: link_stat "/all/GCF/002/957/295/GCF…
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Hello!
I am getting the following error for stringtie command: stringtie -o outputfile -G annotationfile bamfile
"Error: no valid ID found for GFF record
Aborted (core dumped)"
I am using the …
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This is my script:
`haystac sample \
--fastq-r1 "/data1/user/zhaozh/2.PIG/1.screen/10.CSSS_230928/rawdata/X101SC23023451-Z01-J242/01.RawData/SS16/SS16_1.fq.gz" \
--fastq-r2 "/data1/…
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Disc name: Art Explosion: Greeting Card Factory: Version 4 (Disc 1)
Each time this disc is dumped (good and bad), the following occurs:
`[LBA: 105283] subcode desync (shift: -1)`
However, on so…