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Hi Eric,
I couldnt manage to send you a direct message on your github profile so i am writing my question here. pls feel free to move it somewhere else. I observe that in your paper, you have shown t…
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Dear scGPT creators,
On the cell type annotation tutorial there is a typo:
At the UMAP plotting:
`In the cell-type annotation task, the fine-tuned scGPT predicts cell-type labels for query se…
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I have another similar error to what is showing on a lot of posts, but this is with the most current version install with a fresh environment, so I'm not sure why all dependencies are not included in …
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### Description of feature
https://nf-co.re/modules/metaeuk_easypredict
Default tool for gene prediction in eukaryote genome mode
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Hi,
Thank you very much for writing the QTG code to find orthologues in model species. I am new to Python and interested in running these codes to find the rice orthologue in Arabidopsis. I ran this …
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\[
\mathbf{h}^…
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# Contribution Guidelines
1. **Initial Setup**
- Clone the repository: `git clone `
2. **Update Local Content**
- Ensure you’re up to date with the development branch:
```bash
git ch…
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I just installed 1.8.17 on a new system and am going through the test pipeline fixing errors.
The current one though I am not sure what to do about.
It happens during BUSCO-mediated training. Ho…
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I've been developing a metagenomic/metatranscriptomics software suite called VEBA (https://github.com/jolespin/veba) that natively handles eukaryotic binning of metagenome-assembled genomes and exon-a…
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Hi Simon,
I'm getting errors running the gene prediction
As no *_nett_filtered.fasta can be found, I ran Step1 independently. The command is:
`perl Step_1_contigs_cleaning_and_gene_prediction.pl …