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`geom_density_ridges` requires a minimum of three values. But, sometimes a core gene set has only two.
![image](https://github.com/user-attachments/assets/fdfa8d42-2c85-4c38-99b0-bc54d3b0f81b)
`…
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```
gsea_BP_astro_33 0.05 before using gseGO() or keep all genes.
I would appreciate it if you can help. Thanks.
Flu09 updated
1 month ago
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Initial outline given by Rani attached.
[GSEA-gEAR.docx](https://github.com/IGS/gEAR/files/8343067/GSEA-gEAR.docx)
[DiffxPy](
https://diffxpy.readthedocs.io/en/latest/api/index.html#gene-set-enri…
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Hello,
I'm trying to plot a list of my results of enrichment analysis but my plot show GO terms and I would like to show description.
If I plot just one element of my list there is no problem to sho…
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Hello,
I am using the function compareCluster for three different lists of genes (Drosophila melanogaster; flybase Fbgn). When I have the results I observe that not all the genes are used for the e…
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Hi there,
so I have started a cellxgene project and as I want to use multiple datasets and also keep the plug in VIP, I have combined both extensions ([](https://githubhot.com/repo/interactiverepo…
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I'm trying to write a shiny app using this package, however, I am unable to identify the input structure required to run GSEA. More specifically, I need to know what is the first argument for gsePathw…
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### Setup
I am reporting a problem with gseapy == 1.1.2,
Python == 3.8.19, and
operatingsystem == Ubuntu 20
My code as follows, the goal is to have gseapy complete the enrichment of each clu…
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Hi EnrichR team:
I'm a researcher at University of Calgary. We are encountering connection errors when trying to access the Enrichr API from the University of Calgary’s ARC HPC environment. The sp…
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We need to figure out the plan how we scientifically validate the data we produce.
@xyg123 could you please add the summary we discussed yesterday?